BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 3188046	117 (1.440)	6 (0.090)	3/84	NT	5.9%	coding (1991/2466 nt)	yqiG	predicted outer membrane usher protein
*	?	AP009048	= 3188089	91 (1.300)	6 (0.090)	3/84	NT	5.9%	coding (2034/2466 nt)	yqiG	predicted outer membrane usher protein

Only 100 of 137 total aligned reads displayed.

CTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCAT  >  AP009048/3188020‑3188159

cTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa                                                                       >  1:3067785‑M2/1‑70 (MQ=255)

cTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa                                                                       >  1:1138015‑M2/1‑70 (MQ=255)

cTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa                                                                       >  1:4150599‑M2/1‑70 (MQ=255)

   taGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaa                                                                      >  1:2888454‑M2/1‑67 (MQ=255)

    aGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaaacg                                                                   <  1:3290596‑M2/71‑6 (MQ=255)

     gCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaaacg                                                                   >  1:2685052‑M2/1‑65 (MQ=255)

       ggTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcgcgc                                                                >  1:1359788/1‑71 (MQ=255)

           gTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt                                                             <  1:2255874/70‑1 (MQ=255)

           gTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt                                                             <  1:4286619/70‑1 (MQ=255)

              cTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt                                                             >  1:4905684/1‑67 (MQ=255)

              cTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACt                                                         <  1:4284830/71‑1 (MQ=255)

               tGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACt                                                         >  1:5485736/1‑70 (MQ=255)

                   tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAAt                                                                        <  1:4856817/51‑1 (MQ=255)

                   tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAAt                                                                        <  1:6844763/51‑1 (MQ=255)

                   tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAAt                                                                        <  1:2847774/51‑1 (MQ=255)

                   tCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTa                                                            <  1:7733170/63‑1 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGTCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt                                                  <  1:3195777/71‑1 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAAc                                                          >  1:4188904/1‑63 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAAc                                                          >  1:3898309/1‑63 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   >  1:919783/1‑70 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   >  1:7346909/1‑70 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   >  1:1402718/1‑70 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt                                                  <  1:5504587/71‑1 (MQ=255)

                     gcgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt                                                  <  1:6381852/71‑1 (MQ=255)

                     gcgTTTTATGATCGACGAAGACGGCACTGAAGATATTCCGTTGAACAATa                                                                       <  1:901351‑M2/50‑2 (MQ=255)

                      cgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt                                                  <  1:7541661/70‑1 (MQ=255)

                      cgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTa                                                 <  1:339639/71‑1 (MQ=255)

                      cgTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTa                                                 <  1:1063294/71‑1 (MQ=255)

                       gTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCTGt                                                  <  1:1758872/69‑1 (MQ=255)

                          ttATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCg                                                    >  1:2492120/1‑64 (MQ=255)

                          ttATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATgg                                              <  1:3066757/70‑1 (MQ=255)

                           tATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGc                                             <  1:5151487/70‑1 (MQ=255)

                           tATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCa                                            >  1:5261482/1‑71 (MQ=255)

                            aTGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCa                                            <  1:5831103/70‑1 (MQ=255)

                            aTGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCa                                            >  1:792402/1‑70 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa                                                                       <  1:808621‑M2/42‑2 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCTGTATGGCATc                                          >  1:5646959/1‑71 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATg                                               >  1:628390/1‑66 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATc                                          >  1:7798462/1‑71 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATc                                          >  1:3346705/1‑71 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATc                                          >  1:5026085/1‑71 (MQ=255)

                             tGATCGACGCAGACGGCACTGAAGATATTACGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATc                                          >  1:7693445/1‑71 (MQ=255)

                              gATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaaacgcg                                                                 >  1:2597918‑M2/1‑40 (MQ=255)

                               aTCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTa                                                            <  1:7821382/51‑1 (MQ=255)

                               aTCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCgg                                        <  1:1213537/71‑1 (MQ=255)

                                tCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCg                                         >  1:590591/1‑69 (MQ=255)

                                tCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCg                                         >  1:2305567/1‑69 (MQ=255)

                                tCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCg                                         >  1:2296264/1‑69 (MQ=255)

                                tCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCg                                         >  1:4580024/1‑69 (MQ=255)

                                tCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCg                                         >  1:4589362/1‑69 (MQ=255)

                                 cGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAg                                      >  1:154925/1‑71 (MQ=255)

                                  gACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATg                                               >  1:4097066/1‑61 (MQ=255)

                                    cGCAGACGGCACTGAAGATATTCCGTTGAACAATaaacgcgagtcagcactaccgctatagtcgtggaaag                                   >  1:7805973‑M2/1‑34 (MQ=255)

                                     gCAGACGGCACTGAAGATATTCCGTTGAACAATaaacgcgagtcagcactaccgctatagtcgtggaaagc                                  <  1:2739223‑M2/71‑39 (MQ=255)

                                     gCAGACGGCACTGAAGATATTCCGTTGAACAATaaacgcgagtcagcactaccgctatagtcgtggaaagc                                  <  1:6583351‑M2/71‑39 (MQ=255)

                                     gCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTAt                                  <  1:509316/71‑1 (MQ=255)

                                      cAGACGGCACTGAAGATATTCCGTTGAACAATaaacgcgagtcagcactaccgctatagtcgtggaaag                                   >  1:3022559‑M2/1‑32 (MQ=255)

                                       aGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTc                                <  1:1924011/71‑1 (MQ=255)

                                         aCGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   <  1:6216467/50‑1 (MQ=255)

                                         aCGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   <  1:1084475/50‑1 (MQ=255)

                                         aCGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCa                              >  1:7149230/1‑71 (MQ=255)

                                          cGGCACTGAAGATATTCCGTTGAACAATaaacgcgagtcagcactaccgctatagtcgtggaaagcggcac                             >  1:707998‑M2/1‑28 (MQ=255)

                                           ggCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt                                                  >  1:4710131/1‑49 (MQ=255)

                                           ggCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTa                                                 >  1:2890982/1‑50 (MQ=255)

                                             cACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtcag                          <  1:2136878/71‑1 (MQ=255)

                                              aCTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTa                                   <  1:7216063/61‑1 (MQ=255)

                                              aCTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTa                                   <  1:6617919/61‑1 (MQ=255)

                                              aCTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtcag                          <  1:7634271/70‑1 (MQ=255)

                                               cTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   <  1:6597276/44‑1 (MQ=255)

                                               cTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   <  1:6497716/44‑1 (MQ=255)

                                               cTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTcc                               <  1:5712551/64‑1 (MQ=255)

                                               cTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtcagtc                        <  1:2132912/71‑1 (MQ=255)

                                                 gAAGATATTCCGTTGAACAATAAACGCGCGGTAACTaa                                                       <  1:3502278/38‑1 (MQ=255)

                                                 gAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTAt                                                >  1:2558453/1‑45 (MQ=255)

                                                  aaGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCgg                                                   <  1:5677333/41‑1 (MQ=255)

                                                  aaGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCgg                                        >  1:6720992/1‑52 (MQ=255)

                                                  aaGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtcagtcag                      >  1:4045324/1‑70 (MQ=255)

                                                   aGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTcagca                    <  1:5492296/71‑1 (MQ=255)

                                                     atatTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCa                                            <  1:3210415/45‑1 (MQ=255)

                                                     atatTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCa                                            <  1:7935234/45‑1 (MQ=255)

                                                     atatTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCa                                            <  1:244857/45‑1 (MQ=255)

                                                     atatTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTcaacact                  >  1:4689689/1‑69 (MQ=255)

                                                      tatTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGtt                 <  1:4515946/71‑1 (MQ=255)

                                                        ttCCGTTGAACAATAAACGCGCGGTAACTAATCGGTAt                                                >  1:3218143/1‑38 (MQ=255)

                                                         tCCGTTGAACAATAAACGCGCGGTAACTAATCGGTa                                                 >  1:1369451/1‑36 (MQ=255)

                                                          ccGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACa              <  1:1691336/70‑1 (MQ=255)

                                                            gTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTa                                   >  1:4875397/1‑47 (MQ=255)

                                                             ttGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATaa           >  1:3417205/1‑70 (MQ=255)

                                                             ttGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATaa           >  1:2833804/1‑70 (MQ=255)

                                                             ttGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATaa           >  1:2006753/1‑70 (MQ=255)

                                                              tGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATaac          >  1:1040249/1‑70 (MQ=255)

                                                                aaCAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATaaca         <  1:4070052/69‑1 (MQ=255)

                                                                 aCAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAacaaca      <  1:3641248/71‑1 (MQ=255)

                                                                 aCAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAacaaca      <  1:4433441/71‑1 (MQ=255)

                                                                  cAATAAACGCGCGGTAACTAATCGGTATGGCATCGGa                                       >  1:2705812/1‑37 (MQ=255)

                                                                  cAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGtt                 <  1:5117188/59‑1 (MQ=255)

                                                                   aaTAAACGCGCGGTAACTAATCGGTATGGCATCGGa                                       <  1:7718273/36‑1 (MQ=255)

                                                                   aaTAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcat     >  1:3754298/1‑70 (MQ=255)

                                                                    aTAAACGCGCGGTAACTAATCGGTATGGCATCGGa                                       <  1:1066853/35‑1 (MQ=255)

                                                                     tAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcatcat  >  1:6715966/1‑71 (MQ=255)

CTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCAT  >  AP009048/3188020‑3188159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.