| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4055520 = | 70 (0.860) | 8 (0.110) | 5/84 | NT | 12.4% | coding (137/285 nt) | yrhB | hypothetical protein |
| ? | AP009048 | 4055548 = | 53 (0.760) | coding (109/285 nt) | yrhB | hypothetical protein | |||||
CCGGTCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4055596‑4055520‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaaacAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > AP009048/4055548‑4055615 CCGGTCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCT < 1:176048/71‑1 CGGTCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTC > 1:1448908/1‑71 GTCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCG > 1:5326908/1‑70 TCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAA < 1:1250245/71‑1 TCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGA > 1:5810226/1‑70 GTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAAAC < 1:3099484/71‑1 GTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAAA < 1:3757786/70‑1 GCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAAAC > 1:6352035/1‑52 CTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAAAC > 1:3070641/1‑39 TTTCGAAGCACGAGAATTTCTCGAAACAGAAATACCAGGCCTGGCTAAAGCGT > 1:2097873/1‑53 TTTCGAAGCACGAGAATTTCTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGA < 1:811146/62‑1 TTTCGAAGCACGAGAATTTCTCGAAACAGAAATACCAGCCCTGGCTAAAGCGT > 1:7040806/1‑53 TTTCGAAGCACGAGAATTTCTCGAAACAGAAATACCAGCCCTGGCTA < 1:3164804/47‑1 AAGCACGAGAATTTCTCGAAACAGAAATACCAGCCCTGGCTAAAG < 1:4457101/45‑1 CACGAGAATTTCTCGAAACTGAAATACCAGCCCTGGCTAAAGCG > 1:5883777/1‑44 CACGAGAATTTCTCGAAACTGAAATACCAGCCCTGGCTAAAGC > 1:5407109/1‑43 GAATTTCTCGAAACAGAAATACCTGCCCTGGCTAAAGCGTCAATGTAGA < 1:3991452/49‑1 TCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCAT > 1:3910938/1‑70 CGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATC > 1:1080531/1‑70 AAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCTTCAAG > 1:6512254/1‑71 ACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > 1:387958/1‑70 ACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > 1:5631089/1‑70 ACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > 1:1330267/1‑70 CAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGAT > 1:4948521/1‑55 CCGGTCGTCATTACTCTACATGGACGCTTTAGCCAGGGCTGGTATTTCTGTTTCGAAGCACGAGAATTTCTCGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4055596‑4055520‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaaacAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > AP009048/4055548‑4055615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |