| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4055520 = | 70 (0.860) | 8 (0.110) | 5/84 | NT | 12.4% | coding (137/285 nt) | yrhB | hypothetical protein |
| ? | AP009048 | 4055548 = | 53 (0.760) | coding (109/285 nt) | yrhB | hypothetical protein | |||||
AAAGGTGCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > AP009048/4055481‑4055615 | aaaGGTGCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGa > 1:3238596/1‑70 (MQ=255) ggTGCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATa > 1:535480/1‑71 (MQ=255) gCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATAc < 1:2670728/69‑1 (MQ=255) gCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATAc < 1:2661550/69‑1 (MQ=255) gCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTAGTGCTTCGAAACAGAAATaa < 1:5521388/69‑2 (MQ=255) ttACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGcc < 1:6968251/71‑1 (MQ=255) tACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAAt > 1:2529277/1‑63 (MQ=255) aCCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGc > 1:5011173/1‑68 (MQ=255) aCCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGc > 1:1791634/1‑68 (MQ=255) aCCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCt > 1:318155/1‑71 (MQ=255) cAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTgg > 1:2115205/1‑71 (MQ=255) cTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAg < 1:1379698/53‑1 (MQ=255) cTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAg < 1:4901767/53‑1 (MQ=255) cTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTa < 1:434330/71‑1 (MQ=255) cTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTa < 1:2530811/71‑1 (MQ=255) cTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTa < 1:684848/71‑1 (MQ=255) aaGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACa < 1:4720875/50‑1 (MQ=255) aaGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCtg > 1:886317/1‑68 (MQ=255) gCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATg < 1:1712314/71‑1 (MQ=255) ccTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGt < 1:3400382/71‑1 (MQ=255) cTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTa < 1:2864598/71‑1 (MQ=255) tCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGc < 1:3765135/61‑1 (MQ=255) tCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATg > 1:592065/1‑68 (MQ=255) cATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCa > 1:2436869/1‑46 (MQ=255) cATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCa > 1:1631701/1‑46 (MQ=255) cATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCa > 1:7172944/1‑46 (MQ=255) cATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCa > 1:7448234/1‑46 (MQ=255) cATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCa > 1:3114003/1‑46 (MQ=255) aTCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAAt > 1:7839287/1‑41 (MQ=255) aTCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGc < 1:3170377/53‑1 (MQ=255) aTCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTagag > 1:650102/1‑71 (MQ=255) aTCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTa > 1:2900966/1‑68 (MQ=255) tcCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTaa > 1:2488558/1‑53 (MQ=255) tcCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTaa > 1:7267169/1‑53 (MQ=255) tcCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACAAGCCCTGGCTaa > 1:119688/1‑53 (MQ=255) ccAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTaa > 1:7049149/1‑70 (MQ=255) ccAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAAt > 1:2940450/1‑71 (MQ=255) cAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa > 1:3935317/1‑59 (MQ=255) cAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAAt < 1:7741972/70‑1 (MQ=255) cAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAAt < 1:6919446/70‑1 (MQ=255) cAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAAt < 1:740427/70‑1 (MQ=255) cAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAAt < 1:2001392/70‑1 (MQ=255) GTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAg > 1:3070641‑M1/1‑39 (MQ=255) GTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGc > 1:6352035‑M1/1‑52 (MQ=255) GTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATgac < 1:3099484‑M1/71‑1 (MQ=255) tttcgaagcacgagaatttctcgaaacAGAAATACCAGGCCTGGCTAAAGCGt > 1:2097873‑M2/28‑53 (MQ=255) tttcgaagcacgagaatttctcgaaacAGAAATACCAGCCCTGGCTa < 1:3164804‑M2/20‑1 (MQ=255) tttcgaagcacgagaatttctcgaaacAGAAATACCAGCCCTGGCTAAAGCGt > 1:7040806‑M2/28‑53 (MQ=255) tttcgaagcacgagaatttctcgaaacAGAAATACCAGCCCTGGCTAAAGCGTCCATGTaga < 1:811146‑M2/35‑1 (MQ=255) TTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATgac < 1:3757786‑M1/70‑1 (MQ=255) TTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATgacga < 1:1250245‑M1/71‑1 (MQ=255) TCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATgacga > 1:5810226‑M1/1‑70 (MQ=255) CGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATgacgac > 1:5326908‑M1/1‑70 (MQ=255) GAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCg > 1:1448908‑M1/1‑71 (MQ=255) aagcacgagaatttctcgaaacAGAAATACCAGCCCTGGCTAAAg < 1:4457101‑M2/23‑1 (MQ=255) AGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCgg < 1:176048‑M1/71‑1 (MQ=255) gaAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCg > 1:3685049/1‑69 (MQ=255) aaaTTCTCGTGCTTCTAAACAGAAATACCATCCCTGGCTa < 1:7624836/40‑1 (MQ=38) aaaTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCAt > 1:7887248/1‑50 (MQ=255) cacgagaatttctcgaaacTGAAATACCAGCCCTGGCTAAAGc > 1:5407109‑M2/20‑43 (MQ=255) cacgagaatttctcgaaacTGAAATACCAGCCCTGGCTAAAGCg > 1:5883777‑M2/20‑44 (MQ=255) aaTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTc < 1:2015097/46‑1 (MQ=255) aaTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGgag < 1:706887/71‑1 (MQ=255) aTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTa < 1:6787365/38‑1 (MQ=255) aTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCgg > 1:7069834/1‑67 (MQ=255) aTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCgg > 1:569651/1‑67 (MQ=255) aTTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGGCCATGTAGAGTAATgacgac > 1:3426941/1‑64 (MQ=255) ttCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTaaa < 1:2668919/39‑1 (MQ=255) ttCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa > 1:5527389/1‑46 (MQ=255) ttCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa > 1:7248543/1‑46 (MQ=255) tctcGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATg > 1:3752287/1‑47 (MQ=255) tctcGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATg > 1:184081/1‑47 (MQ=255) gaatttctcgaaacAGAAATACCTGCCCTGGCTAAAGCGTCAATGTaga < 1:3991452‑M2/35‑1 (MQ=255) cGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATg < 1:4708614/44‑1 (MQ=255) gTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTaa < 1:6365847/51‑1 (MQ=255) gTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTaa < 1:2116219/51‑1 (MQ=255) gTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTaa < 1:4240688/51‑1 (MQ=255) gTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTaa > 1:1974248/1‑51 (MQ=255) gTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCt < 1:7781589/68‑1 (MQ=255) gTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTg < 1:675369/69‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa < 1:2736884/40‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa < 1:3766433/40‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa < 1:5510044/40‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa < 1:556496/40‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCa < 1:6364200/40‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCt < 1:101502/67‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCt < 1:131805/67‑1 (MQ=255) tGCTTCGAAACAGAAATACCAGCCATGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCt < 1:6527040/67‑1 (MQ=255) cTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGcatca > 1:4993952/1‑71 (MQ=255) ttCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATgacg < 1:3706187/52‑1 (MQ=255) tcgaaacAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGcatcat > 1:3910938‑M2/8‑70 (MQ=255) cgaaacAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCatcatc > 1:1080531‑M2/7‑70 (MQ=255) aaacAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCTTCAAg > 1:6512254‑M2/5‑71 (MQ=255) acAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAgg > 1:387958‑M2/3‑70 (MQ=255) acAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAgg > 1:5631089‑M2/3‑70 (MQ=255) acAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAgg > 1:1330267‑M2/3‑70 (MQ=255) cAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGAt > 1:4948521‑M2/2‑55 (MQ=255) aGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATga > 1:6490557/1‑42 (MQ=255) aGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCg > 1:2732120/1‑48 (MQ=255) | AAAGGTGCGTTACCAGCTAAGCGCGCGGCCTCATCTCCAGTTTCGAGAAATTCTCGTGCTTCGAAACAGAAATACCAGCCCTGGCTAAAGCGTCCATGTAGAGTAATGACGACCGGGAGATCTGCATCATCAAGG > AP009048/4055481‑4055615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |