| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4285443 | 98 (1.200) | 10 (0.140) | 5/88 | NT | 9.3% | coding (1223/1293 nt) | yjcF | conserved hypothetical protein |
| ? | AP009048 | = 4285461 | 108 (1.480) | coding (1205/1293 nt) | yjcF | conserved hypothetical protein | |||||
CCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4285371‑4285443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTACTGCAGATAT < AP009048/4285461‑4285392 CCTCAATCTTCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTG > 1:1416176/1‑71CCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTG < 1:5326413/71‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:2058370/71‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:6533337/71‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:4751818/71‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:4688123/71‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:4687627/71‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTG < 1:7590908/70‑1 CTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTG < 1:3487213/70‑1 TCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT > 1:1351796/1‑70 CAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTG > 1:2186057/1‑70 CAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT > 1:2773969/1‑69 AATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTG < 1:7927597/69‑1 ATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTT > 1:7933671/1‑65 ATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTG > 1:754111/1‑60 ATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGT < 1:3823956/70‑1 CAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCACAA < 1:4219464/68‑1 ATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCAC < 1:4518346/61‑1 ATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCAC < 1:498769/61‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCTGTT < 1:5553518/35‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:4678391/38‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCAGTT < 1:6572621/35‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCAGTT < 1:313616/35‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCAGTT < 1:5925347/35‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCAGTT < 1:6770798/35‑1 TCTTCATAGCGACTGCATGAAGATTATCCTCAGTT < 1:5725353/35‑1 TTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCACAAA > 1:626252/1‑61 TTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCACAAA > 1:4995109/1‑61 TTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCACAAA > 1:5069956/1‑61 TTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:6794071/36‑1 TTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:5724816/36‑1 TTCATAGCGACTGCATGAAGATTATCCTCAGTTTGT < 1:6784774/36‑1 AGATTATCCTCAGTTTGTGCCACTCATACTGGCATGTCACAAACT < 1:7601979/45‑1 GATTATCCTCAGATTGTGCCACTCATACTGGCATGT < 1:4427137/36‑1 GATTATCCTCAGATTGTGCCACTCATACTGGCATGT < 1:4047478/36‑1 TTGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATT < 1:3523751/64‑1 TGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCA > 1:7514831/1‑44 TGTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCA > 1:3271934/1‑44 GTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGA > 1:4503622/1‑60 GTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGA > 1:4285379/1‑60 GTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAG > 1:6582265/1‑59 GTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAA < 1:5403720/58‑1 GTGCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAA < 1:5292334/58‑1 GCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTACTGCAGATAT > 1:5876661/1‑71 GCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATG > 1:2253195/1‑43 CCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4285371‑4285443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgCCACTCATACTGGCATGTCACAAACTGAGGATAATCTTCATGCAGTCGCTATGAAGATTACTGCAGATAT < AP009048/4285461‑4285392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |