| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4285443 | 98 (1.200) | 10 (0.140) | 5/88 | NT | 9.3% | coding (1223/1293 nt) | yjcF | conserved hypothetical protein |
| ? | AP009048 | = 4285461 | 108 (1.480) | coding (1205/1293 nt) | yjcF | conserved hypothetical protein | |||||
Only 100 of 157 total aligned reads displayed.
ATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCAC > AP009048/4285392‑4285530 | atatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTgg < 1:7421724/70‑1 (MQ=255) aGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:402437/1‑71 (MQ=255) aGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:1888522/1‑71 (MQ=255) gTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:7454452/1‑70 (MQ=255) gTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:4722542/1‑70 (MQ=255) tCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac > 1:4285379‑M2/1‑57 (MQ=255) cTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac > 1:6582265‑M2/1‑56 (MQ=255) ttCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac < 1:5403720‑M2/58‑4 (MQ=255) ttCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac < 1:5292334‑M2/58‑4 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:2380378/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:5574628/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:4109570/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAg > 1:2512032/1‑70 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAg > 1:4750316/1‑70 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAg > 1:5524149/1‑70 (MQ=255) aGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAtt > 1:2411667/1‑71 (MQ=255) gACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCt > 1:3726630/1‑71 (MQ=255) tGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTg > 1:313334/1‑69 (MQ=255) cATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAg < 1:1099356/70‑1 (MQ=255) aTGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCttcttc < 1:6950572/54‑1 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcaca > 1:3271934‑M2/1‑40 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcaca > 1:7514831‑M2/1‑40 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAt > 1:1094387/1‑60 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtgt > 1:7372263/1‑71 (MQ=255) gAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtgt > 1:2348883/1‑70 (MQ=255) aaGATTATCCTCTGTTTGTGACATGCCAGTATGAGTGGCACAAt > 1:2082599/1‑44 (MQ=255) aaGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAt > 1:1051318/1‑44 (MQ=255) aGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTAc > 1:5113349/1‑71 (MQ=255) aGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTAc > 1:7066499/1‑71 (MQ=255) aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:2636288/42‑1 (MQ=255) aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:5056453/42‑1 (MQ=255) aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:2180590/42‑1 (MQ=255) ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:2556570/1‑53 (MQ=255) ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:5433298/1‑53 (MQ=255) ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:2716782/1‑53 (MQ=255) tATCCTCAGTTTGTGACATGCCAGTATGAGTGGCTCAATCTTCTTCAAAGaa > 1:2102158/1‑52 (MQ=255) tATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:2777667/1‑52 (MQ=255) tATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:4061449/1‑52 (MQ=255) tCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGat < 1:6159799/71‑1 (MQ=255) ccTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtg < 1:3635431/60‑1 (MQ=255) tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGtt > 1:5565487/1‑60 (MQ=255) tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGtt > 1:4904416/1‑60 (MQ=255) tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGatat > 1:5329877/1‑70 (MQ=255) tCAGTTTGTGACATGACAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGata > 1:4453254/1‑69 (MQ=255) aGTTTGTGACATGCCAGTATGAGTGGcacaaactgaggataatct < 1:7601979‑M2/45‑20 (MQ=255) tttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaa > 1:5069956‑M2/1‑24 (MQ=255) tttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaa > 1:4995109‑M2/1‑24 (MQ=255) tttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTg < 1:7321850/49‑1 (MQ=255) tttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTg < 1:7615772/49‑1 (MQ=255) ttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaagattactg < 1:4219464‑M2/68‑46 (MQ=255) ttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTAt > 1:2815005/1‑71 (MQ=255) tgtgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTAt < 1:7622797/70‑1 (MQ=255) gtgACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaagat < 1:498769‑M2/61‑41 (MQ=255) gtgACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaagat < 1:4518346‑M2/61‑41 (MQ=255) tgACATGCCAGTATGAGTGGCACAATCTTCTTCaa > 1:7477812/1‑35 (MQ=255) tgACATGCCAGTATGAGTGGCACAATCTTCTTCaa > 1:7564710/1‑35 (MQ=255) tgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTa < 1:3373247/47‑1 (MQ=255) aCATGCCAGTATGAGTGGcacaatctgaggataatc < 1:4427137‑M2/36‑19 (MQ=255) aCATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaagattactgcagatat < 1:3823956‑M2/70‑53 (MQ=255) aCATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAg < 1:5779591/55‑1 (MQ=255) aCATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAg < 1:1739714/55‑1 (MQ=255) aCATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAg < 1:4003252/55‑1 (MQ=255) aTGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGa > 1:1712466/1‑55 (MQ=255) aTGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGa > 1:7729647/1‑55 (MQ=255) tGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAttt < 1:79043/37‑1 (MQ=255) tGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATg > 1:6509919/1‑68 (MQ=255) tGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGgag < 1:2746764/71‑1 (MQ=255) tGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGgag < 1:6681249/71‑1 (MQ=255) ccAGTATGAGTGGCACAATCTTCTTCAAAGAAttt > 1:1798434/1‑35 (MQ=255) ccAGTATGAGTGGCACAATCTTCTTCAAAGAAttt > 1:6366793/1‑35 (MQ=255) ccAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCTCCATTaa < 1:6169822/64‑1 (MQ=255) cAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGata < 1:4351503/71‑1 (MQ=255) cAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGata > 1:6558834/1‑71 (MQ=255) cAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGata > 1:2329128/1‑71 (MQ=255) cAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGata > 1:3179428/1‑71 (MQ=255) aGTATGAGTTGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCTCCATTAAta < 1:5661808/64‑2 (MQ=255) aGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCTCCATTAAta < 1:4331607/64‑2 (MQ=255) aGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATg > 1:606329/1‑64 (MQ=255) gTATGAGTGGCACAATCTTCTTCAAAGAATTTCTg < 1:1982104/35‑1 (MQ=255) gTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCAc < 1:7609264/55‑1 (MQ=255) tATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCTCCATTAAtagt > 1:5827131/1‑61 (MQ=255) tATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCTCCATTAAtagt > 1:5699654/1‑61 (MQ=255) tATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTAtt < 1:7141638/58‑1 (MQ=255) tATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATg < 1:1350562/62‑1 (MQ=255) tATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGATATAttt < 1:16043/71‑1 (MQ=255) tATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATAttt < 1:4921141/71‑1 (MQ=255) aTGAGTGGCACAATCTTCTTCAAAGAATTTCTGTa > 1:683982/1‑35 (MQ=255) tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtg < 1:6904610/37‑1 (MQ=255) tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtg < 1:778294/37‑1 (MQ=255) tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCTCCATTAATAGTGatatcct > 1:1599006/1‑67 (MQ=25) tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTc > 1:7109179/1‑71 (MQ=255) tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTc < 1:6294341/71‑1 (MQ=255) aGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCCCTATTaa < 1:3440635/56‑1 (MQ=255) aGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTaa < 1:1057043/56‑1 (MQ=255) tGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGa < 1:2515599/42‑1 (MQ=255) tGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATg > 1:2659907/1‑56 (MQ=255) tGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTcc < 1:2837621/68‑1 (MQ=255) gCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGata > 1:4486258/1‑42 (MQ=255) gCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTaa > 1:3481194/1‑52 (MQ=255) gCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTcac > 1:1262516/1‑70 (MQ=255) | ATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCAC > AP009048/4285392‑4285530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |