| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4285443 | 98 (1.200) | 10 (0.140) | 5/88 | NT | 9.3% | coding (1223/1293 nt) | yjcF | conserved hypothetical protein |
| ? | AP009048 | = 4285461 | 108 (1.480) | coding (1205/1293 nt) | yjcF | conserved hypothetical protein | |||||
Only 100 of 157 total aligned reads displayed.
CAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAAT > AP009048/4285374‑4285513 | cAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGa > 1:524091/1‑71 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGa < 1:6284148/70‑1 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGa < 1:4899797/70‑1 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGAc < 1:2519367/71‑1 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTG < 1:7927597‑M1/69‑1 (MQ=255) aTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACa < 1:1435127/71‑1 (MQ=255) cTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATg > 1:1215706/1‑71 (MQ=255) cTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATg > 1:6759001/1‑71 (MQ=255) cTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATg > 1:7109558/1‑71 (MQ=255) tGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGc > 1:7676900/1‑71 (MQ=255) tGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGc > 1:1471234/1‑71 (MQ=255) aTCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCac > 1:347204/1‑70 (MQ=255) cATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa < 1:202803/70‑1 (MQ=255) ataataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGt < 1:7205325/71‑1 (MQ=255) taataTCTGCAGTAATCTTCATAGCGTCTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTg > 1:6099696/1‑71 (MQ=255) aataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa > 1:2458951/1‑67 (MQ=255) aataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa > 1:3594067/1‑67 (MQ=255) aataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa > 1:429385/1‑67 (MQ=255) atatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGccactcatactggcatgt < 1:3823956‑M1/70‑19 (MQ=255) atatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa < 1:247243/66‑1 (MQ=255) atatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa < 1:4924189/66‑1 (MQ=255) atatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTgg < 1:4428639/70‑1 (MQ=255) tatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa < 1:583326/65‑1 (MQ=255) aGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:1888522/1‑71 (MQ=255) aGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:1865605/1‑71 (MQ=255) aGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:402437/1‑71 (MQ=255) gTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:7454452/1‑70 (MQ=255) gTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtctt > 1:4722542/1‑70 (MQ=255) gTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACAAGCCAGTATGAGTGGCACAAtcttc < 1:2133454/71‑1 (MQ=255) aaTCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcacaa < 1:3523751‑M2/64‑6 (MQ=255) aTCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGccactcatactggcatgtcac < 1:498769‑M1/61‑22 (MQ=255) aTCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGccactcatactggcatgtcac < 1:4518346‑M1/61‑22 (MQ=255) tCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac > 1:4503622‑M2/1‑57 (MQ=255) ttCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGccactcatactggcatgtcacaaa > 1:4995109‑M1/1‑37 (MQ=255) ttCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGcc < 1:6315098/44‑1 (MQ=255) ttCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGcc < 1:151992/44‑1 (MQ=255) tCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGa > 1:924379/1‑37 (MQ=255) tCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGa > 1:3689723/1‑37 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:4109570/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:5574628/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:7903942/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCa < 1:2380378/67‑1 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAg > 1:5524149/1‑70 (MQ=255) aGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAtt > 1:267432/1‑71 (MQ=255) aGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAtt > 1:2411667/1‑71 (MQ=255) aGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAtt > 1:2351243/1‑71 (MQ=255) gCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGa > 1:607607/1‑45 (MQ=255) gACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCt > 1:3726630/1‑71 (MQ=255) tGCATGAAGATTATCCTCAGTTTGTGACATGCCAg < 1:7302937/35‑1 (MQ=255) tGCATGAAGATTATCCTCAGTTTGTGACATGCCAg < 1:6729440/35‑1 (MQ=255) tGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTg > 1:313334/1‑69 (MQ=255) cATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGc > 1:2253195‑M2/1‑42 (MQ=255) cATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgt < 1:4169922/71‑1 (MQ=255) aTGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCttcttc < 1:6950572/54‑1 (MQ=255) aTGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCttcttc < 1:7464390/54‑1 (MQ=255) aTGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCttcttc < 1:205642/54‑1 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcaca > 1:3271934‑M2/1‑40 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcaca > 1:7514831‑M2/1‑40 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAt > 1:1094387/1‑60 (MQ=255) tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtgt > 1:7372263/1‑71 (MQ=255) gAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtgt > 1:5067752/1‑70 (MQ=255) aaGATTATCCTCTGTTTGTGACATGCCAGTATGAGTGGCACAAt > 1:2082599/1‑44 (MQ=255) aaGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAt > 1:1051318/1‑44 (MQ=255) aGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTAc > 1:5113349/1‑71 (MQ=255) aGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTAc > 1:7066499/1‑71 (MQ=255) gATTATCCTCAGATTGTGccactcatactggcatgt < 1:4047478‑M1/36‑19 (MQ=255) gATTATCCTCAGATTGTGccactcatactggcatgt < 1:4427137‑M1/36‑19 (MQ=255) aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:2180590/42‑1 (MQ=255) aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:3189911/42‑1 (MQ=255) ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:5433298/1‑53 (MQ=255) ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:2556570/1‑53 (MQ=255) ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:534920/1‑53 (MQ=255) tATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa > 1:2777667/1‑52 (MQ=255) tCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGat < 1:6159799/71‑1 (MQ=255) ccTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAgtg < 1:3635431/60‑1 (MQ=255) cTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCt < 1:7726524/53‑1 (MQ=255) cTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGatat < 1:4771417/71‑1 (MQ=255) tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGtt > 1:5565487/1‑60 (MQ=255) tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGatat > 1:6585102/1‑70 (MQ=255) tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGatat > 1:5329877/1‑70 (MQ=255) aGTTTGTGACATGCCAGTATGAGTGGcacaaactgaggataatct < 1:7601979‑M2/45‑20 (MQ=255) aGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAttt > 1:7372941/1‑48 (MQ=255) tttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaa > 1:4995109‑M2/1‑24 (MQ=255) tttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaa > 1:626252‑M2/1‑24 (MQ=255) tttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaa > 1:5069956‑M2/1‑24 (MQ=255) tttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTg < 1:7615772/49‑1 (MQ=255) ttGTGccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaagatt < 1:3523751‑M1/64‑60 (MQ=255) ttGTGACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaagattactg < 1:4219464‑M2/68‑46 (MQ=255) ttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTAt > 1:2815005/1‑71 (MQ=255) tgtgccactcatactggcatgtcacaaactgaggataatcttca > 1:7514831‑M1/1‑4 (MQ=255) gtgccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaaga > 1:4503622‑M1/1‑3 (MQ=255) gtgccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaaga > 1:4285379‑M1/1‑3 (MQ=255) gtgccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaag > 1:6582265‑M1/1‑3 (MQ=255) gtgccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaa < 1:5292334‑M1/58‑56 (MQ=255) gtgccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaa < 1:5403720‑M1/58‑56 (MQ=255) gtgACATGCCAGTATGAGTGGcacaaactgaggataatcttcatgcagtcgctatgaagat < 1:4518346‑M2/61‑41 (MQ=255) tgACATGCCAGTATGAGTGGCACAATCTTCTTCaa > 1:7564710/1‑35 (MQ=255) tgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTa < 1:3373247/47‑1 (MQ=255) gccactcatactggcatgtcacaaactgaggataatcttcatgcagtcgctatgaagattactgcagatat > 1:5876661‑M1/1‑1 (MQ=255) gccactcatactggcatgtcacaaactgaggataatcttcatg > 1:2253195‑M1/1‑1 (MQ=255) | CAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAAT > AP009048/4285374‑4285513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |