| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1241642 | 52 (0.640) | 6 (0.100) | 3/76 | NT | 12.1% | intergenic (+116/+270) | dadX/cvrA | alanine racemase 2, PLP‑binding/predicted cation/proton antiporter |
| ? | AP009048 | = 1241649 | 47 (0.740) | intergenic (+123/+263) | dadX/cvrA | alanine racemase 2, PLP‑binding/predicted cation/proton antiporter | |||||
CATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCAT > AP009048/1241579‑1241717 | catccGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAgg < 1:5814587/71‑1 (MQ=255) aTCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGa < 1:7897340‑M2/71‑2 (MQ=255) aTCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGa > 1:7519695‑M2/1‑70 (MQ=255) tccGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGAGTCCATTAAAAgg < 1:1354119/69‑1 (MQ=255) ccGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatg < 1:4353398‑M2/71‑4 (MQ=255) cGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatg > 1:4408366‑M2/1‑67 (MQ=255) cGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatg < 1:1975897‑M2/70‑4 (MQ=255) cGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGat < 1:3072075‑M2/69‑3 (MQ=255) cGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGat < 1:1505741‑M2/69‑3 (MQ=255) ggCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatgga > 1:6453889‑M2/1‑66 (MQ=255) ggCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatgga > 1:242121‑M2/1‑66 (MQ=255) gTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatggacac > 1:6407660‑M2/1‑61 (MQ=255) aGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTAttt < 1:1120165/71‑1 (MQ=255) aGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTAttt < 1:2889674/71‑1 (MQ=255) aaCTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTcc < 1:1877631/70‑1 (MQ=255) gTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCgg > 1:830610/1‑70 (MQ=255) tAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGaa > 1:5601085/1‑71 (MQ=255) tAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGa < 1:3281501/70‑1 (MQ=255) tAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGa < 1:3002144/70‑1 (MQ=255) aGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAAc > 1:1163938/1‑71 (MQ=255) gttgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAAcc > 1:6131566/1‑71 (MQ=255) ttgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatggacact > 1:4748424‑M2/1‑47 (MQ=255) ttgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatggacact > 1:2630658‑M2/1‑47 (MQ=255) ttgttAATGTGACAGAGCCATTGCACATGATAGTGTCCATTAAAAGGatggacact > 1:3996742‑M2/1‑47 (MQ=255) ttgttAATGTGACAGAGCCATTGCACATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCt > 1:7895061/1‑71 (MQ=255) tgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatggac < 1:4829740‑M2/52‑7 (MQ=255) gttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTg < 1:2448228/70‑1 (MQ=255) gttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTg < 1:7450819/70‑1 (MQ=255) tAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatggacact < 1:3490702‑M2/52‑10 (MQ=255) tAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAAc > 1:3259017/1‑71 (MQ=255) aaTGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAAc > 1:1540917/1‑70 (MQ=255) tgtgACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTc < 1:3713894/70‑1 (MQ=255) gtgACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCAc > 1:1331213/1‑71 (MQ=255) gtgACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCAc > 1:5560550/1‑71 (MQ=255) aCAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatg < 1:7314128‑M2/39‑4 (MQ=255) aCAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatg < 1:81350‑M2/39‑4 (MQ=255) aCAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGatg < 1:2686775‑M2/39‑4 (MQ=255) aCAGAGCCATTGCCCATGATAGTGTACATTAAAAGGatg < 1:5697582‑M2/39‑4 (MQ=255) cAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGca < 1:7258754/71‑1 (MQ=255) cAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGca < 1:4505735/71‑1 (MQ=255) gagCCATTGCCCATGATAGTGTCCATTAAAAGGatggacacta > 1:1824225‑M2/1‑33 (MQ=255) agCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTg > 1:1503942/1‑57 (MQ=255) gCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCTCACAgg < 1:13660/71‑1 (MQ=255) aTTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGt < 1:6084910/71‑1 (MQ=255) aTTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGt < 1:4669738/71‑1 (MQ=255) gCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTcccc > 1:7002815/1‑42 (MQ=255) gCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTcccc > 1:4494169/1‑42 (MQ=255) gCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGaa > 1:7399764/1‑52 (MQ=255) cccATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCt < 1:442032/70‑1 (MQ=255) cccATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTa > 1:5793648/1‑71 (MQ=255) ccATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTa < 1:6373061/70‑1 (MQ=255) cATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACa > 1:7293977/1‑71 (MQ=255) tGATAGTGTCCATTTAAAGGatggacactatcatgggcaatggctctgtcacattaacaactacagttgct < 1:5729432‑M2/71‑52 (MQ=255) tGATAGTGTCCATTAAAAGGatggacactatcatgggcaatggctctgtcacattaacaactacagttgct < 1:826000‑M2/71‑52 (MQ=255) tGATAGTGTCCATTAAAAGGatggacactatcatgg < 1:3063901‑M2/36‑17 (MQ=255) tGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGt < 1:26131/63‑1 (MQ=255) cgATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGt < 1:1646966/62‑1 (MQ=255) gATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATa > 1:4019664/1‑70 (MQ=255) gATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGCCGTTCTACATa > 1:1011849/1‑70 (MQ=255) aTAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATaa < 1:6939461/70‑1 (MQ=255) aTAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATaa < 1:7227177/70‑1 (MQ=255) aTAGTGTCCATTAAAAGGATGGACACTATTTCCCAGGAACCTGAACTCACCGCACAGGCGTTCTACATaa < 1:1576440/70‑1 (MQ=255) tAGTGTCCATTAAAAGGatggacactatcatgggcaatggctctgtcacattaacaactacagttgct < 1:6292582‑M2/68‑52 (MQ=255) tAGTGTCCATTAAAAGGatggacactatcatgggcaatggctctgtcacattaacaactacagttgct < 1:3526924‑M2/68‑52 (MQ=255) gtgtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAac < 1:1812703/70‑1 (MQ=255) gtgtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAac < 1:7145846/70‑1 (MQ=255) gtgtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAac < 1:4338653/70‑1 (MQ=255) tgtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAacgc < 1:1329917/71‑1 (MQ=255) ccATTAAAAGGatggacactatcatgggcaatggctctgtcacatt < 1:3094059‑M2/46‑36 (MQ=255) ccATTAAAAGGatggacactatcatgggcaatggctctgtcacatt < 1:6894610‑M2/46‑36 (MQ=255) cATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTc < 1:1232342/55‑1 (MQ=255) ttAAAATGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAacgcttacgc < 1:6759731/71‑1 (MQ=255) ttAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCa > 1:622800/1‑39 (MQ=255) ttAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCa > 1:782376/1‑39 (MQ=255) ttAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCa > 1:2642556/1‑39 (MQ=255) ttAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCa > 1:5898539/1‑39 (MQ=255) tAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATaaaa > 1:5936311/1‑61 (MQ=255) aaaaGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGt > 1:260182/1‑49 (MQ=255) aaaaGGATGAACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCg > 1:2992501/1‑48 (MQ=255) caGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCa < 1:3506377/70‑1 (MQ=255) aaGGatggacactatcatgggcaatggctctgtcacattagcaactgtagttgtt > 1:5040427‑M2/1‑4 (MQ=255) aaGGATGGACACTATTTCCCCGGAACCTGAACTCACCGcac < 1:871650/41‑1 (MQ=255) aaGGATGGACACTATTTCCCCGGAACCTGAACTCACCGc < 1:6086382/39‑1 (MQ=255) aaGGATGGACACTATTTCCCCGGAACCTGAACTCACCGc < 1:3520743/39‑1 (MQ=255) aaGGATGGACACTATTTCCCCGGAACCTGAACTCACCGc < 1:2810999/39‑1 (MQ=255) aGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCAt > 1:4949361/1‑71 (MQ=255) gATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACa < 1:1132014/50‑1 (MQ=255) | CATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCAT > AP009048/1241579‑1241717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |