| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 715224 = | 56 (0.950) | 8 (0.150) | 3/94 | NT | 10.9% | coding (931/1209 nt) | mdtH | predicted drug efflux system |
| ? | Exported | 715252 = | 79 (1.450) | coding (903/1209 nt) | mdtH | predicted drug efflux system | |||||
AAGCATGATGCCGGTGGGCATGGTCAGCGGCCTGCAACAACTTTTCACCCTGATTTGTCTGTTTTATATCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/715297‑715224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC > Exported/715252‑715320 AAGCATGATGCCGGTGGGCATGGTCAGGGGCCTGCAACAACTTTTCACCCTGATTTGTCTGTTTTATATCG > 1:1000665/1‑71 TTTTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCAT < 1:2905655/60‑1 TTTTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCAT < 1:3579296/60‑1 TTTTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCAT < 1:3724410/60‑1 TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC > 1:1354220/1‑60 TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC > 1:725300/1‑60 TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC > 1:757487/1‑60 TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATG > 1:604424/1‑59 ACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC > 1:3400028/1‑57 GGTGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAG > 1:2177511/1‑71 GGTGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAG > 1:3091764/1‑71 GTGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC < 1:363412/71‑1 TGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC > 1:1370090/1‑70 AAGCATGATGCCGGTGGGCATGGTCAGCGGCCTGCAACAACTTTTCACCCTGATTTGTCTGTTTTATATCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/715297‑715224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC > Exported/715252‑715320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |