New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported = 219261750 (0.850)7 (0.130) 4/92 NT 13.3% coding (86/639 nt) sspA stringent starvation protein A
?Exported = 2192634 46 (0.860)coding (69/639 nt) sspA stringent starvation protein A

GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/2192544‑2192617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaTCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA  <  Exported/2192634‑2192569
                                                                                                                                            
GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG                                                                       >  1:1976976/1‑71
GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG                                                                       >  1:2764600/1‑71
GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG                                                                       >  1:3104829/1‑71
 AGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC                                                                      <  1:594614/71‑1
 AGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC                                                                      <  1:1470689/71‑1
   GTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC                                                                      >  1:2017169/1‑69
   GTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC                                                                      >  1:3102177/1‑69
   GTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC                                                                      >  1:3389177/1‑69
      AATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC                                                                      <  1:1541162/66‑1
           GATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCA                                                                        >  1:581184/1‑59
           GATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCA                                                                        >  1:450871/1‑59
           GATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCA                                                                        >  1:3266040/1‑59
             TCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCC                                                                     <  1:529845/60‑1
                           GTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTG                                                    >  1:3176845/1‑63
                              CTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA                                         <  1:3587911/71‑1
                              CTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA                                         <  1:1738971/71‑1
                                      CGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA                                         >  1:2909484/1‑63
                                      CGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA                                         >  1:2646131/1‑63
                                      CGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA                                         >  1:932870/1‑63
                                            CGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTGCTGGCTGA                                            >  1:500206/1‑54
                                                                      GCCATCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA  <  1:15893/70‑1
                                                                      GCCATCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA  <  1:727583/70‑1
                                                                                                                                            
GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/2192544‑2192617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaTCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA  <  Exported/2192634‑2192569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.