| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2192617 | 50 (0.850) | 7 (0.130) | 4/92 | NT | 13.3% | coding (86/639 nt) | sspA | stringent starvation protein A |
| ? | Exported | = 2192634 | 46 (0.860) | coding (69/639 nt) | sspA | stringent starvation protein A | |||||
TCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTT > Exported/2192548‑2192684 | tCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTcagccag < 1:2171053/71‑1 (MQ=255) cAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTcagccag > 1:1163590/1‑70 (MQ=255) cAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTcagccag > 1:1459452/1‑70 (MQ=255) aaTCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGca > 1:954998/1‑71 (MQ=255) aaTCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGca > 1:1147234/1‑71 (MQ=255) aaTCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGca > 1:1163190/1‑71 (MQ=255) gATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATg < 1:342110/71‑1 (MQ=255) gATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATg < 1:3460121/71‑1 (MQ=255) aTCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:1361812/1‑71 (MQ=255) gAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCgg < 1:42725/68‑1 (MQ=255) aGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCgg < 1:3651812/67‑1 (MQ=255) ttttCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGa < 1:1379299/63‑1 (MQ=255) ttGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGa < 1:3175341/66‑1 (MQ=255) ttGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAtggc < 1:15893‑M2/70‑5 (MQ=255) ttGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAtggc < 1:727583‑M2/70‑5 (MQ=255) gTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAtcaggtccgcattgtg > 1:3176845‑M1/1‑47 (MQ=255) cTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAtcaggtccgcattgtgctggctgagaa < 1:3587911‑M1/71‑28 (MQ=255) cTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAtcaggtccgcattgtgctggctgagaa < 1:1738971‑M1/71‑28 (MQ=255) cTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCta > 1:3617075/1‑67 (MQ=255) ccACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGcaca < 1:199701/44‑1 (MQ=255) cACGTGTTCTATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAg < 1:1608325/64‑1 (MQ=255) cACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCa < 1:990979/70‑1 (MQ=255) aCGTGTTCGATCTCGAAACTTACACCTTTTTCAGCCAGCACAAt > 1:1889152/1‑44 (MQ=255) aCGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAAt > 1:690963/1‑44 (MQ=255) cGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCAtcaggtccgcattgtgctggctgagaa > 1:932870‑M1/1‑36 (MQ=255) cGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCAtcaggtccgcattgtgctggctgagaa > 1:2909484‑M1/1‑36 (MQ=255) cGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCAtcaggtccgcattgtgctggctgagaa > 1:2646131‑M1/1‑36 (MQ=255) cGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAg > 1:185615/1‑69 (MQ=255) gtgtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACGATGCGGACCTGATGGCTATAGATGTCAGTAg < 1:316217/71‑1 (MQ=255) gtgtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAg < 1:3425042/71‑1 (MQ=255) gtgtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAg < 1:1081281/71‑1 (MQ=255) ttCGATCTCGAAACTTACACCTTTCTCAGCCAGcac < 1:2797651/36‑1 (MQ=255) cGATCTCGAAACTTACACCTTTCTCAGCCAtcaggtccgcattgtgctggctga > 1:500206‑M1/1‑30 (MQ=255) cGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCg > 1:1233774/1‑71 (MQ=255) cGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCg > 1:1238211/1‑71 (MQ=255) tctcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGa > 1:1369935/1‑70 (MQ=255) tctcGAAACTTACACCTATCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGa > 1:597275/1‑70 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:1854055/1‑35 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:830398/1‑35 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:2554382/1‑35 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:2574099/1‑35 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:793150/1‑35 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGc > 1:1778618/1‑35 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAg < 1:458889/52‑1 (MQ=255) tcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa > 1:3151899/1‑71 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:3182424/1‑52 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:1021667/1‑52 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:1675495/1‑52 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:2333119/1‑52 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa > 1:1134900/1‑69 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:640286/69‑1 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:476798/69‑1 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:2904364/67‑1 (MQ=255) aaaCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:1168429/66‑1 (MQ=255) aaCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGc < 1:3187190/71‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:1830835/66‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:3686788/66‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCg > 1:283589/1‑71 (MQ=255) ttACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCg < 1:583996/69‑1 (MQ=255) acCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTa > 1:936983/1‑71 (MQ=255) ccTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTAc < 1:2055196/71‑1 (MQ=255) cTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGGCCGGaaaa > 1:130613/1‑58 (MQ=255) cTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTAc < 1:2195663/70‑1 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaag < 1:3587911‑M2/71‑45 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaag < 1:1738971‑M2/71‑45 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctaagaaaggtgtaagtttcgagatcgaacacg > 1:2909484‑M2/1‑27 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctaagaaaggtgtaagtttcgagatcgaacacg > 1:932870‑M2/1‑27 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctaagaaaggtgtaagtttcgagatcgaacacg > 1:2646131‑M2/1‑27 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCg > 1:579257/1‑70 (MQ=255) tctcAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGt < 1:3063830/43‑1 (MQ=255) tcAGCCAGCACAATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcg > 1:500206‑M2/1‑24 (MQ=255) cagccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:2016487/50‑1 (MQ=255) cagccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:1597224/50‑1 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:2233233/1‑71 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:3010567/1‑71 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:3099134/1‑71 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:3135105/1‑71 (MQ=255) gCCAtcaggtccgcattgtgctggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaaggacaa < 1:727583‑M1/70‑67 (MQ=255) gCCAtcaggtccgcattgtgctggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaaggacaa < 1:15893‑M1/70‑67 (MQ=255) agcACAATGCGGACCTGATGGCTATAGATGTCAGTa < 1:1946369/36‑1 (MQ=255) | TCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTT > Exported/2192548‑2192684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |