| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2192617 | 50 (0.850) | 7 (0.130) | 4/92 | NT | 13.3% | coding (86/639 nt) | sspA | stringent starvation protein A |
| ? | Exported | = 2192634 | 46 (0.860) | coding (69/639 nt) | sspA | stringent starvation protein A | |||||
TTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGA > Exported/2192569‑2192704 | ttttCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGa < 1:1379299/63‑1 (MQ=255)ttGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGa < 1:3175341/66‑1 (MQ=255)ttGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAtggc < 1:727583‑M2/70‑5 (MQ=255)ttGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAtggc < 1:15893‑M2/70‑5 (MQ=255) cTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCta > 1:3617075/1‑67 (MQ=255) cACGTGTTCTATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAg < 1:1608325/64‑1 (MQ=255) cACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCa < 1:990979/70‑1 (MQ=255) cGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAg > 1:185615/1‑69 (MQ=255) gtgtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACGATGCGGACCTGATGGCTATAGATGTCAGTAg < 1:316217/71‑1 (MQ=255) gtgtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAg < 1:1081281/71‑1 (MQ=255) gtgtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAg < 1:3425042/71‑1 (MQ=255) cGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCg > 1:1233774/1‑71 (MQ=255) cGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCg > 1:1238211/1‑71 (MQ=255) tctcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGa > 1:1369935/1‑70 (MQ=255) tctcGAAACTTACACCTATCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGa > 1:597275/1‑70 (MQ=255) ctcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAg < 1:458889/52‑1 (MQ=255) tcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa > 1:3151899/1‑71 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:1021667/1‑52 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:3182424/1‑52 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:2333119/1‑52 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGAt > 1:1675495/1‑52 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa > 1:1134900/1‑69 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:640286/69‑1 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:476798/69‑1 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:2904364/67‑1 (MQ=255) aaaCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:1168429/66‑1 (MQ=255) aaCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGc < 1:3187190/71‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:1830835/66‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa < 1:3686788/66‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCg > 1:283589/1‑71 (MQ=255) ttACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCg < 1:583996/69‑1 (MQ=255) acCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTa > 1:936983/1‑71 (MQ=255) ccTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTAc < 1:2055196/71‑1 (MQ=255) cTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGGCCGGaaaa > 1:130613/1‑58 (MQ=255) cTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTAc < 1:2195663/70‑1 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaag < 1:3587911‑M2/71‑45 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaag < 1:1738971‑M2/71‑45 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctaagaaaggtgtaagtttcgagatcgaacacg > 1:2909484‑M2/1‑27 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctaagaaaggtgtaagtttcgagatcgaacacg > 1:932870‑M2/1‑27 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGAtggctaagaaaggtgtaagtttcgagatcgaacacg > 1:2646131‑M2/1‑27 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCg > 1:579257/1‑70 (MQ=255) tctcAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGt < 1:3063830/43‑1 (MQ=255) tcAGCCAGCACAATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcg > 1:500206‑M2/1‑24 (MQ=255) cagccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:2016487/50‑1 (MQ=255) cagccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:1597224/50‑1 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:3135105/1‑71 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:3099134/1‑71 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:3010567/1‑71 (MQ=255) gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt > 1:2233233/1‑71 (MQ=255) agcACAATGCGGACCTGATGGCTATAGATGTCAGTa < 1:1946369/36‑1 (MQ=255) cacaATGCGGACCTGAtggctgagaaaggtgtaagtttcgagatcgaacacgtggaaaaggac > 1:3176845‑M2/1‑16 (MQ=255) cacaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGaa > 1:3064758/1‑61 (MQ=255) cacaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTgg < 1:3173575/71‑1 (MQ=255) caATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCa < 1:2573370/71‑1 (MQ=255) tGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGaa < 1:2185757/38‑1 (MQ=255) tGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCg < 1:48020/71‑1 (MQ=255) tGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCg < 1:2190961/71‑1 (MQ=255) tGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCg < 1:581802/71‑1 (MQ=255) gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGttt < 1:1310423/60‑1 (MQ=255) cGGACCTGATGGCTATAGATGTCAGTAGGACCGGaaaa > 1:3254441/1‑38 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATg < 1:574214/70‑1 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGa < 1:2312668/71‑1 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGa < 1:2301501/71‑1 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGa < 1:2377443/71‑1 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGa < 1:884300/71‑1 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGa < 1:3170218/71‑1 (MQ=255) | TTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGA > Exported/2192569‑2192704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |