| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1330180 = | 57 (0.970) | 4 (0.080) | 3/84 | NT | 9.0% | intergenic (‑20/+35) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase |
| ? | Exported | 1330204 = | 34 (0.700) | intergenic (‑44/+11) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase | |||||
GATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCG > Exported/1330110‑1330250 | gaTTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGcc < 1:876745/71‑1 (MQ=255) tgtgccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCtt > 1:2276253‑M1/67‑71 (MQ=255) gtgccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTa < 1:799987‑M1/6‑1 (MQ=255) gtgccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTa < 1:2866791‑M1/6‑1 (MQ=255) aCGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCtt < 1:3117565/70‑1 (MQ=255) aCGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTa < 1:3014234/71‑1 (MQ=255) aCGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTa < 1:2405404/71‑1 (MQ=255) tgccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTAc < 1:169250‑M1/7‑1 (MQ=255) gccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTAcc < 1:1385625‑M1/8‑1 (MQ=255) gccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTAcc < 1:51584‑M1/8‑1 (MQ=255) ccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTAccc < 1:2646286‑M1/9‑1 (MQ=255) ccgctgatggaagcgcgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTAccc < 1:1124659‑M1/9‑1 (MQ=255) tGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCg < 1:1169737/71‑1 (MQ=255) ttGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTAc < 1:3353694/64‑1 (MQ=255) ttGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTAc < 1:1091091/64‑1 (MQ=255) tttCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCa > 1:2779692/1‑64 (MQ=255) tttCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑ggg > 1:1614401/1‑70 (MQ=255) ttCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAg > 1:1792635/1‑64 (MQ=255) ttCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAg > 1:3551220/1‑64 (MQ=255) ttCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAg > 1:1014880/1‑64 (MQ=255) ttCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGt < 1:3721136/70‑1 (MQ=255) tcgctcgctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGt > 1:588560/1‑69 (MQ=255) tcgctcgctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGt > 1:490128/1‑69 (MQ=255) tcgctcgctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTa < 1:316478/70‑1 (MQ=255) tcgctcgctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTa < 1:1866388/70‑1 (MQ=255) tcgctcgctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTa < 1:737464/70‑1 (MQ=255) cgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTACCCGCAGTG‑GGGTAAgg < 1:758081‑M1/23‑1 (MQ=255) cgaacgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTACCCGCAGTG‑GGGTAAgg < 1:2816884‑M1/23‑1 (MQ=255) tcgctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑gg < 1:569054/63‑1 (MQ=255) gctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAggg > 1:1166455/1‑68 (MQ=255) gctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAg < 1:1905924/71‑1 (MQ=255) ctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGa < 1:15370/71‑1 (MQ=255) ctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGa < 1:247875/71‑1 (MQ=255) cgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCtt < 1:992569‑M1/5‑1 (MQ=255) cgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTa < 1:2634183‑M1/6‑1 (MQ=255) cgcgaactctgctgacgttgctgaacgagtaatgtcggatcttCCCTTa < 1:1558345‑M1/6‑1 (MQ=255) tcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCC‑CACTGCGGGTAAggg > 1:1095652/1‑66 (MQ=25) tcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCC‑CACTGCGGGTAAggg > 1:158357/1‑66 (MQ=25) cgcgCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg > 1:3444362/1‑56 (MQ=255) cgcgCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATc > 1:2203319/1‑71 (MQ=255) gcgcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATcc > 1:3679797/1‑71 (MQ=255) gcgcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATcc < 1:3372562/71‑1 (MQ=255) cgcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAgg < 1:2024451/62‑1 (MQ=255) gcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGa > 1:1353671/1‑71 (MQ=255) cTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATGCGa > 1:3363766/1‑70 (MQ=255) ttttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACa > 1:1398159/1‑71 (MQ=255) tttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCg < 1:1221250/45‑1 (MQ=255) tttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCg < 1:1129591/45‑1 (MQ=255) ttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGaa > 1:2043104/1‑60 (MQ=255) ttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACAt > 1:578536/1‑70 (MQ=255) tgctgacgttgctgaacgagtaatgtcggatcttCCCt < 1:1453847‑M1/4‑1 (MQ=255) tttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTa > 1:414112/1‑71 (MQ=255) ttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAgg > 1:989336/1‑55 (MQ=255) ttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTAc > 1:1358006/1‑71 (MQ=255) tAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATcc < 1:1089005/62‑1 (MQ=255) aGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTc > 1:366174/1‑71 (MQ=255) gATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGa > 1:213213/1‑62 (MQ=255) aTTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTaa > 1:3678691/1‑49 (MQ=255) aTTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGt < 1:2484036/71‑1 (MQ=255) tttGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGtt < 1:2193601/71‑1 (MQ=255) gTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAg > 1:3242163/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGaa < 1:1489151/47‑1 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa > 1:2376381/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa > 1:1387893/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa > 1:2259190/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa < 1:312042/71‑1 (MQ=255) acgagtaatgtcggatcttCCCTTACCCGCAGTG‑GGGTAAg < 1:1441730‑M1/22‑1 (MQ=255) gagtaatgtcggatcttCCCTTACCCGCAGTG‑GGGTAAg > 1:1813771‑M1/18‑39 (MQ=255) tgttCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGt > 1:2214709/1‑69 (MQ=255) tCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcag > 1:214675/1‑69 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcagca < 1:2843445/70‑1 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcagca < 1:596625/70‑1 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCagag > 1:1516501/1‑71 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCagag > 1:716970/1‑71 (MQ=255) ttattaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgtt < 1:2898676/71‑1 (MQ=255) gCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:365309/70‑1 (MQ=255) gCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:2477308/70‑1 (MQ=255) gCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:3024211/70‑1 (MQ=255) gCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:2741642/70‑1 (MQ=255) ccccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTca < 1:2503997/56‑1 (MQ=255) ccccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttc < 1:2473402/71‑1 (MQ=255) ccccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttc < 1:2605704/71‑1 (MQ=255) CCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:767729‑M1/71‑1 (MQ=255) CCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:2216975‑M1/71‑1 (MQ=255) CCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:2941945‑M1/71‑1 (MQ=255) | GATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCG > Exported/1330110‑1330250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |