| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1330180 = | 57 (0.970) | 4 (0.080) | 3/84 | NT | 9.0% | intergenic (‑20/+35) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase |
| ? | Exported | 1330204 = | 34 (0.700) | intergenic (‑44/+11) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase | |||||
GCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACC > Exported/1330136‑1330274 | gctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAg < 1:1905924/71‑1 (MQ=255) ctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGa < 1:247875/71‑1 (MQ=255) ctcgcGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGa < 1:15370/71‑1 (MQ=255) cgcgCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATc > 1:2203319/1‑71 (MQ=255) gcgcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATcc < 1:3372562/71‑1 (MQ=255) gcgcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATcc > 1:3679797/1‑71 (MQ=255) gcTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGa > 1:1353671/1‑71 (MQ=255) cTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATGCGa > 1:3363766/1‑70 (MQ=255) ttttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACa > 1:1398159/1‑71 (MQ=255) ttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGaa > 1:2043104/1‑60 (MQ=255) ttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACAt > 1:578536/1‑70 (MQ=255) tttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTa > 1:414112/1‑71 (MQ=255) ttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTAc > 1:1358006/1‑71 (MQ=255) tAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATcc < 1:1089005/62‑1 (MQ=255) aGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTc > 1:366174/1‑71 (MQ=255) gATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGa > 1:213213/1‑62 (MQ=255) aTTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGt < 1:2484036/71‑1 (MQ=255) tttGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGtt < 1:2193601/71‑1 (MQ=255) gTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAg > 1:3242163/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGaa < 1:1489151/47‑1 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa > 1:2376381/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa < 1:312042/71‑1 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa > 1:2259190/1‑71 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCaa > 1:1387893/1‑71 (MQ=255) tgttCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGt > 1:2214709/1‑69 (MQ=255) tCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcag > 1:214675/1‑69 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcagca < 1:2843445/70‑1 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcagca < 1:596625/70‑1 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCagag > 1:716970/1‑71 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCagag > 1:1516501/1‑71 (MQ=255) ttattaGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgtt < 1:2898676/71‑1 (MQ=255) gCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:3024211/70‑1 (MQ=255) gCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:365309/70‑1 (MQ=255) gCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:2477308/70‑1 (MQ=255) gCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:2741642/70‑1 (MQ=255) ccccTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTca < 1:2503997/56‑1 (MQ=255) ccccTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttc < 1:2473402/71‑1 (MQ=255) ccccTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttc < 1:2605704/71‑1 (MQ=255) CCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:767729‑M1/71‑1 (MQ=255) CCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:2941945‑M1/71‑1 (MQ=255) CCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:2216975‑M1/71‑1 (MQ=255) ccttaccccactgcgggtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:2816884‑M2/47‑1 (MQ=255) ccttaccccactgcgggtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 1:758081‑M2/47‑1 (MQ=255) CCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAAc < 1:2507492‑M1/50‑1 (MQ=255) cttaccccactgcgggtaagggAAGATCCGACATTACTc > 1:1813771‑M2/23‑39 (MQ=255) cttaccccactgcgggtaagggAAGATCCGACATTACTCGt < 1:1441730‑M2/19‑1 (MQ=255) CTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcagca > 1:3277657‑M1/1‑56 (MQ=255) CTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGttcgcgttcgcg > 1:1121531‑M1/1‑71 (MQ=255) CTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGttcgcgttcgcg > 1:1616934‑M1/1‑71 (MQ=255) ACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTc < 1:1986520‑M1/40‑1 (MQ=255) ACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTc < 1:401671‑M1/40‑1 (MQ=255) ACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCtt < 1:751346‑M1/71‑1 (MQ=255) CCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCACCGTCAGCAGAGTTCGCGTTCGCGCTTc < 1:1859074‑M1/70‑1 (MQ=255) gCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:1578064/59‑1 (MQ=255) aGTGGTGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCa < 1:1896960/71‑1 (MQ=255) aGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCt < 1:3330406/64‑1 (MQ=255) aGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCa < 1:604952/71‑1 (MQ=255) aGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCa < 1:2618180/71‑1 (MQ=255) aGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCa < 1:529007/71‑1 (MQ=255) tGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGc < 1:3136498/71‑1 (MQ=255) gggtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCgg < 1:2646286‑M2/62‑1 (MQ=255) gggtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCgg < 1:1124659‑M2/62‑1 (MQ=255) ggtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGc < 1:1385625‑M2/63‑1 (MQ=255) ggtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGc < 1:51584‑M2/63‑1 (MQ=255) gtaagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGca < 1:169250‑M2/64‑1 (MQ=255) taagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcg < 1:1558345‑M2/43‑1 (MQ=255) taagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcg < 1:2634183‑M2/43‑1 (MQ=255) taagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcac < 1:799987‑M2/65‑1 (MQ=255) taagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcac < 1:2866791‑M2/65‑1 (MQ=255) aagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcg < 1:992569‑M2/43‑1 (MQ=255) aagggAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcaca > 1:2276253‑M2/6‑71 (MQ=255) agggAAGATCCGACATTACTCGTTCAGCAACGTcagca < 1:1453847‑M2/34‑1 (MQ=255) aaGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCa < 1:3624744/58‑1 (MQ=255) aaGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCa < 1:2954219/58‑1 (MQ=255) aaGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCAcc > 1:1210184/1‑71 (MQ=255) | GCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACC > Exported/1330136‑1330274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |