| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2923517 = | 74 (1.250) | 5 (0.090) | 4/96 | NT | 5.5% | coding (1705/2856 nt) | valS | valyl‑tRNA synthetase |
| ? | Exported | 2923556 = | 102 (1.840) | coding (1666/2856 nt) | valS | valyl‑tRNA synthetase | |||||
Only 100 of 109 total aligned reads displayed.
TCCGCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAT > Exported/2923447‑2923583 | aaaccgcaggtgccgttccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtc < 1:3655394‑M1/1‑1 (MQ=255)aaaccgcaggtgccgttccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtc < 1:2771257‑M1/1‑1 (MQ=255)aaaccgcaggtgccgttccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtc < 1:1433077‑M1/1‑1 (MQ=255) aaccgcaggtgccgttccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtc < 1:1703672‑M1/1‑1 (MQ=255) cGCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAAcc < 1:1530630/70‑1 (MQ=255) cGCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCa < 1:3239924/71‑1 (MQ=255) cGCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCa < 1:170557/71‑1 (MQ=255) accgcaggtgccgttccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtcc < 1:853217‑M1/2‑1 (MQ=255) gCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCa > 1:2653989/1‑70 (MQ=255) gCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCa > 1:532299/1‑70 (MQ=255) ccgcaggtgccgttccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtCCa < 1:3452582‑M1/3‑1 (MQ=255) aGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATc < 1:3097640/71‑1 (MQ=255) gCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATc > 1:595660/1‑70 (MQ=255) gCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCa > 1:695685/1‑60 (MQ=255) ccacaccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtc < 1:3514426‑M1/1‑1 (MQ=255) catcatATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGa > 1:2176782/1‑71 (MQ=255) atcatATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGa > 1:947917/1‑70 (MQ=255) catATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATaa > 1:1367688/1‑71 (MQ=255) caccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtcc > 1:1841371‑M1/51‑52 (MQ=255) caccgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtcc > 1:1651829‑M1/51‑52 (MQ=255) atatTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAAc > 1:1132299/1‑71 (MQ=255) tatTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCatat > 1:1504788/1‑54 (MQ=255) tatTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACg < 1:2630008/71‑1 (MQ=255) cgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtCCa > 1:3125846‑M1/48‑50 (MQ=255) cgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtCCa > 1:3252416‑M1/48‑50 (MQ=255) cgtttacatgaccggcctgattcgtgatgacgaaggccagaagatgtCCa > 1:1871095‑M1/48‑50 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt > 1:557685/1‑71 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:686841/71‑1 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:114314/71‑1 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:1201954/71‑1 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:2153707/71‑1 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt > 1:1364548/1‑71 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:1902/71‑1 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:357763/71‑1 (MQ=255) gTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCtt < 1:1489156/71‑1 (MQ=255) tACGTTTTTCCAGCAGTTCTGGCAGCGAAATACGGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTg > 1:1285651/1‑71 (MQ=255) tACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTg > 1:535401/1‑71 (MQ=255) aCGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCata > 1:2057033/1‑43 (MQ=255) aCGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATcc > 1:3142613/1‑46 (MQ=255) aCGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCa > 1:1668302/1‑47 (MQ=255) aCGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGAt > 1:2981475/1‑57 (MQ=255) aCGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTg > 1:1870117/1‑70 (MQ=255) aCGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTg > 1:943829/1‑70 (MQ=255) cGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAAcc < 1:528976/39‑1 (MQ=255) gTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAt < 1:755834/71‑1 (MQ=255) tttttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAtt > 1:373444/1‑71 (MQ=255) tttttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAtt > 1:1021195/1‑71 (MQ=255) ttttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCa < 1:3515587/37‑1 (MQ=255) ttttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAg > 1:1516486/1‑44 (MQ=255) ttttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt > 1:138553/1‑71 (MQ=255) ttttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt > 1:2359015/1‑71 (MQ=255) ggcctgattcgtgatgacgaaggccagaagatgtCCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt > 1:2775049‑M1/35‑71 (MQ=255) atttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAg > 1:820740/2‑44 (MQ=255) tttCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt < 1:285238/70‑1 (MQ=255) gcctgattcgtgatgacgaaggccagaagatgtCCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt > 1:3399248‑M1/34‑70 (MQ=255) attcgtgatgacgaaggccagaagatgtCCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTg < 1:477602‑M1/38‑1 (MQ=255) agcagTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTg > 1:3550001/1‑66 (MQ=255) ttCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACAtcttct < 1:3398916/71‑1 (MQ=255) ttCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACAtctt < 1:3444724/69‑1 (MQ=255) cTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTgg > 1:3689758/1‑71 (MQ=255) gCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGcc < 1:361354/70‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTg < 1:3408459/66‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTg < 1:3515196/66‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTg < 1:1727112/66‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTg < 1:1376755/66‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCtt < 1:3465691/71‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCtt < 1:3573042/71‑1 (MQ=255) cAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCtt < 1:745470/71‑1 (MQ=255) gCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTc < 1:2536243/70‑1 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCTATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGt > 1:3673860/1‑71 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt < 1:1262989/51‑1 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTg < 1:2457761/52‑1 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTg < 1:3407266/52‑1 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTg < 1:3369504/52‑1 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGt > 1:1053074/1‑71 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGt > 1:3489565/1‑71 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGt > 1:1149842/1‑71 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGt > 1:3002642/1‑71 (MQ=255) cGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGt > 1:2105121/1‑71 (MQ=255) gAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACAtcttc < 1:812191/60‑1 (MQ=255) gAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACAtcttc < 1:2313843/60‑1 (MQ=255) gAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACAtcttc < 1:454448/60‑1 (MQ=255) aaaTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTgg > 1:261119/1‑51 (MQ=255) aaaTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGa > 1:2401990/1‑52 (MQ=255) aaaTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACAtcttc < 1:2901101/59‑1 (MQ=255) aaaTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGtc < 1:1816777/70‑1 (MQ=255) aaTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGtcat > 1:1214468/1‑71 (MQ=255) aTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGtcatc < 1:3192252/71‑1 (MQ=255) aTACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGtcatc < 1:757797/71‑1 (MQ=255) aCCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCAc > 1:673729/1‑71 (MQ=255) cGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGa < 1:2376190/71‑1 (MQ=255) tCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGAttt < 1:2589688/41‑1 (MQ=255) tCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCAacacc > 1:153942/1‑67 (MQ=255) tCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGaa > 1:2840897/1‑70 (MQ=255) tCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAt > 1:3264791/1‑71 (MQ=255) tCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAt > 1:3090939/1‑71 (MQ=255) aaCCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGtcat > 1:2803750/1‑62 (MQ=255) aaCCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAt > 1:2582339/1‑69 (MQ=255) aaCCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAt > 1:2954210/1‑69 (MQ=255) aaCCATATCCAGTGGGTAGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAt > 1:192626/1‑69 (MQ=255) | TCCGCCAGCTGCGGCTGCATCATATTGCCGGTACGTTTTTCCAGCAGTTCTGGCAGCGAAATACCGTCAACCATATCCAGTGGGTCGATAACGTTACCCTTGGATTTGGACATCTTCTGGCCTTCGTCATCACGAAT > Exported/2923447‑2923583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |