| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2175760 = | 34 (0.600) | 3 (0.060) | 3/90 | NT | 9.0% | coding (654/1356 nt) | gatC | galactitol‑specific enzyme IIC component of PTS |
| ? | AP009048 | 2175793 = | 31 (0.620) | coding (621/1356 nt) | gatC | galactitol‑specific enzyme IIC component of PTS | |||||
GATGCTATCATCGAGAAAATCCCAGGCGTTAACCGAATTAAATTTAGCGCCGACGATATTCAGCGCAAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2175831‑2175760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatttAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATAC > AP009048/2175793‑2175859 GATGCTATCATCGAGAAAATCCCAGGCGTTAACCGAATTAAATTTAGCGCCGACGATATTCAGCGCAAATT < 1:2690174/71‑1 ATGCTATCATCGAGAAAATCCCAGGCGTTAACCGAATTAAATTTAGCGCCGACGATATTCAGCGCAAATT < 1:5145029/70‑1 CTATCATCGAGAAAATCCCAGGCGTTAACCGAATTAAATTTAGCGCCGACGATATTCAGCGCA < 1:2740321/63‑1 ATTAAATTTAGCGCCGACGATATTCAGCGCAAATT < 1:2130028/35‑1 TTAAATTTAGCGCCGACGATATTCAGCGCAAATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAG > 1:3895725/1‑70 CGCCGACGATATTCAGCGCAAATTTAATTCGGTTAACGCCTGGGATTT < 1:1566811/48‑1 CCGACGATATTCAGCGCAAATTTAATTCGGTTAACGCCTGGGATTTTC > 1:3914601/1‑48 AATTTAATTCGGTTAACGCCTGGTATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATA > 1:3101403/1‑71 AATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATA > 1:1637262/1‑71 AATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATC < 1:4757671/44‑1 ATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATAC < 1:372105/71‑1 ATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATAC > 1:90031/1‑71 ATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGC > 1:3250582/1‑50 TTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATA > 1:2264869/1‑68 TAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGA > 1:4995261/1‑42 GATGCTATCATCGAGAAAATCCCAGGCGTTAACCGAATTAAATTTAGCGCCGACGATATTCAGCGCAAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2175831‑2175760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatttAATTCGGTTAACGCCTGGGATTTTCTCGATGATAGCATCGACCAGCACCGCAATCGGCCCCATATAC > AP009048/2175793‑2175859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |