| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2175760 = | 34 (0.600) | 3 (0.060) | 3/90 | NT | 9.0% | coding (654/1356 nt) | gatC | galactitol‑specific enzyme IIC component of PTS |
| ? | AP009048 | 2175793 = | 31 (0.620) | coding (621/1356 nt) | gatC | galactitol‑specific enzyme IIC component of PTS | |||||
GTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAG > AP009048/2175691‑2175827 | gTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCa > 1:2985499/1‑70 (MQ=255) gtatatggggccgattgcggtgctggtcgatgctatcatcgagaaaatcccaggcgttaaccgaattAAAt < 1:372105‑M1/4‑1 (MQ=255) gtatatggggccgattgcggtgctggtcgatgctatcatcgagaaaatcccaggcgttaaccgaattAAAt > 1:90031‑M1/68‑71 (MQ=255) tatatggggccgattgcggtgctggtcgatgctatcatcgagaaaatcccaggcgttaaccgaattaa > 1:2264869‑M1/67‑68 (MQ=255) tatatggggccgattgcggtgctggtcgatgctatcatcgagaaaatcccaggcgttaaccgaattAAAtt > 1:1637262‑M1/67‑71 (MQ=255) tatatggggccgattgcggtgctggtcgatgctatcatcgagaaaataccaggcgttaaccgaattAAAtt > 1:3101403‑M1/67‑71 (MQ=255) aCCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAAt < 1:4019511/70‑1 (MQ=255) ccGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAAttt < 1:2641407/70‑1 (MQ=255) gcgAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTgcg < 1:2101548/71‑1 (MQ=255) aTGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTgc < 1:4884466/64‑1 (MQ=255) aTGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTgc < 1:2312979/64‑1 (MQ=255) aTGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTgc < 1:650779/64‑1 (MQ=255) gCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAatat > 1:155076/1‑71 (MQ=255) aTAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATAtcgtc > 1:4263431/1‑71 (MQ=255) tAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTgc < 1:2709075/57‑1 (MQ=255) gctggtcgatgctatcatcgagaaaatcccaggcgttaaccgaattAAAt > 1:3250582‑M1/47‑50 (MQ=255) aGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGgcgc > 1:1312787/1‑70 (MQ=255) gCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTa < 1:242327/71‑1 (MQ=255) tcgatgctatcatcgagaaaatcccaggcgttaaccgaatta > 1:4995261‑M1/42‑42 (MQ=255) cccATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAata < 1:823071/57‑1 (MQ=255) ccATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATAtcgt > 1:1007011/1‑60 (MQ=255) gatgctatcatcgagaaaatcccaggcgttaaccgaattAAAtt < 1:4757671‑M1/5‑1 (MQ=255) cATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAAtt < 1:890111/71‑1 (MQ=255) aTCACAAAACCCACGGTGACAGGCTCTCCAAATGGACCAAATTTgc < 1:4842981/46‑1 (MQ=255) aTCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTgc < 1:710489/46‑1 (MQ=255) tCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATAtcgtcg > 1:3059298/1‑59 (MQ=255) cacaAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTaa > 1:495082/1‑71 (MQ=255) ctatcatcgagaaaatcccaggcgttaaccgaattAAATTTGCGCTGAATATCGTCGGCGCTAAATTTaa > 1:3895725‑M1/36‑70 (MQ=255) acaAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATAtc > 1:4851815/1‑53 (MQ=255) acaAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAAttt < 1:4218409/68‑1 (MQ=255) acaAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAAt > 1:967200/1‑71 (MQ=255) aaaaCCCACGGTGACAGGCTCGCCAAATGGACCAAATTTg > 1:593462/1‑40 (MQ=255) aaaCCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCg > 1:2777770/1‑71 (MQ=255) ccACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTa < 1:1167725/71‑1 (MQ=255) gaaaatcccaggcgttaaccgaattAAATTTGCGCTGAATATCGTCgg > 1:3914601‑M1/26‑48 (MQ=255) aaatcccaggcgttaaccgaattAAATTTGCGCTGAATATCGTCGgcg < 1:1566811‑M1/25‑1 (MQ=255) cAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATTGTCGGCGCTAAATTTAATTCGGTTAACGCCTgg < 1:3057331/70‑1 (MQ=255) cAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTa > 1:1877182/1‑62 (MQ=255) aGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGa < 1:4265483/71‑1 (MQ=255) ggCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGAt < 1:4840592/71‑1 (MQ=255) ccAAATGGACCAAATTTGCGCTGAATATCGTCGgcgc < 1:4828926/37‑1 (MQ=255) ccAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTtctc < 1:4344212/71‑1 (MQ=255) cAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTtctc < 1:812307/70‑1 (MQ=255) aaTGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAAt > 1:2081084/1‑39 (MQ=255) aaTGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCgat > 1:4448587/1‑71 (MQ=255) aTGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCgat > 1:4597975/1‑70 (MQ=255) tGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCgatga < 1:938356/71‑1 (MQ=255) aCCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAg > 1:535886/1‑71 (MQ=255) aCCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAg < 1:1374873/71‑1 (MQ=255) ccAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAg > 1:2572534/1‑70 (MQ=255) | GTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCACGGTGACAGGCTCGCCAAATGGACCAAATTTGCGCTGAATATCGTCGGCGCTAAATTTAATTCGGTTAACGCCTGGGATTTTCTCGATGATAG > AP009048/2175691‑2175827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |