| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3057720 = | 46 (0.820) | 4 (0.080) | 3/88 | NT | 8.7% | coding (262/660 nt) | rpiA | ribosephosphate isomerase, constitutive |
| ? | AP009048 | 3057746 = | 44 (0.910) | coding (236/660 nt) | rpiA | ribosephosphate isomerase, constitutive | |||||
CCTCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3057796‑3057720‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG > AP009048/3057746‑3057814 CCTCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGAGCAGATGAAA < 1:626053/71‑1 TCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAAT > 1:3715975/1‑70 GGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCA < 1:4995219/70‑1 GCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAAC < 1:970495/71‑1 CATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG > 1:2072837/1‑71 CATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG < 1:2591805/71‑1 TCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG > 1:3387709/1‑56 CTCAACGAAGTCTACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAAT < 1:838283/50‑1 AAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCA < 1:2889350/45‑1 ACGTTGATGGCGCAGATGAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTT < 1:2717812/53‑1 ACGTTGATGGCGCAGATGAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTT < 1:3163995/53‑1 GTTGATGGCGCAGATGAAATCAACGTAGATGCCAAGGCTGTCGACTTC < 1:427880/48‑1 TTGATGGCGCAGATGAAATCAACGTAGATGCCAAGGC < 1:2711958/37‑1 ATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAG < 1:3225810/66‑1 TCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTG > 1:3135844/1‑47 TCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGT < 1:3283045/46‑1 TCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAA < 1:3072474/42‑1 CAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTT > 1:3115594/1‑69 CAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCG > 1:663440/1‑53 AACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATG > 1:5006513/1‑49 AACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATG > 1:785949/1‑49 AACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAA > 1:3152645/1‑40 AACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCA < 1:2374120/37‑1 ACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGT > 1:4122888/1‑71 ACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGT < 1:5023326/71‑1 ACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGT > 1:388183/1‑63 ACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAA > 1:1144829/1‑40 CGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG < 1:3719717/71‑1 CGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG < 1:3183617/71‑1 GTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCC < 1:3102803/48‑1 CCTCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3057796‑3057720‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG > AP009048/3057746‑3057814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |