| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3057720 = | 46 (0.820) | 4 (0.080) | 3/88 | NT | 8.7% | coding (262/660 nt) | rpiA | ribosephosphate isomerase, constitutive |
| ? | AP009048 | 3057746 = | 44 (0.910) | coding (236/660 nt) | rpiA | ribosephosphate isomerase, constitutive | |||||
CTGCAACCGAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATG > AP009048/3057651‑3057790 | cactgaaaaactgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCg < 1:3719717‑M1/2‑1 (MQ=255)cactgaaaaactgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCg < 1:3183617‑M1/2‑1 (MQ=255) actgaaaaactgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGt > 1:4122888‑M1/69‑71 (MQ=255) actgaaaaactgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGt < 1:5023326‑M1/3‑1 (MQ=255) cAACCGAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGtt > 1:370073/1‑70 (MQ=255) aaaaactgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGTTg > 1:3115594‑M1/65‑69 (MQ=255) aCCGAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGAt > 1:3951359/1‑71 (MQ=255) aCCGAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGAt > 1:601027/1‑71 (MQ=255) ccGAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGAtt < 1:535122/71‑1 (MQ=255) gAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTc < 1:4723340/71‑1 (MQ=255) actgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGt > 1:388183‑M1/61‑63 (MQ=255) ctgaaaagcctcggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGTTGAt < 1:3225810‑M1/7‑1 (MQ=255) aGCAATGATTTTTTCACGGGTCAGCTCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCAt < 1:4811308/71‑1 (MQ=255) aGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCAt < 1:2471026/71‑1 (MQ=255) gCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATc > 1:1051804/1‑71 (MQ=255) aaTGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTg < 1:4432313/71‑1 (MQ=255) attaTTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTgc > 1:2235005/4‑71 (MQ=255) ttttCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCg < 1:3507710/51‑1 (MQ=255) ttttCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCAt > 1:846117/1‑70 (MQ=255) cggcattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGTTg > 1:663440‑M1/49‑53 (MQ=255) ggcattcacgtttttgatctcaacgaagtcgacagccttggcatctac < 1:3102803‑M1/1‑1 (MQ=255) cattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGtt > 1:5006513‑M1/46‑49 (MQ=255) cattcacgtttttgatctcaacgaagtcgacagccttggcatctaCGtt > 1:785949‑M1/46‑49 (MQ=255) ggTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGa < 1:4375678/71‑1 (MQ=255) cacgtttttgatctcaacgaagtcgacagccttggcatctaCGTTGa > 1:3135844‑M1/42‑47 (MQ=255) gTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTg < 1:4382328/55‑1 (MQ=255) acgtttttgatctcaacgaagtcgacagccttggcatctaCGTTGa < 1:3283045‑M1/6‑1 (MQ=255) tttttgatctcaacgaagtcgacagccttggcatctaCGt > 1:1144829‑M1/38‑40 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGcc < 1:1973895/71‑1 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc > 1:418846/1‑70 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc < 1:1937623/70‑1 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc > 1:2250687/1‑70 (MQ=255) ttttgatctcaacgaagtcgacagccttggcatctaCGtt > 1:3152645‑M1/37‑40 (MQ=255) ttttgatctcaacgaagtcgacagccttggcatctaCGTTGa < 1:3072474‑M1/6‑1 (MQ=255) cgccgcgccgCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCa > 1:4065555/1‑46 (MQ=255) gccgcgccgcCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAg > 1:2342235/1‑71 (MQ=255) tgatctcaacgaagtcgacagccttggcatctaCGtt < 1:2374120‑M1/4‑1 (MQ=255) cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGc > 1:5141703/1‑71 (MQ=255) cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGc > 1:1288798/1‑71 (MQ=255) cgccgccgcCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTg < 1:2105436/71‑1 (MQ=255) gccgccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTg < 1:4242479/70‑1 (MQ=255) ccgccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTc < 1:2163460/71‑1 (MQ=255) aacgaagtcgacagccttggcatctaCGTTGATTTCATCTGCGCCATCAACGt < 1:3163995‑M1/27‑1 (MQ=255) aacgaagtcgacagccttggcatctaCGTTGATTTCATCTGCGCCATCAACGt < 1:2717812‑M1/27‑1 (MQ=255) ccgccTTTGATCATTTGCATGTGGCCGTTGATTTc < 1:110156/35‑1 (MQ=255) ccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTgcgc > 1:4306651/1‑43 (MQ=255) ccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGAc > 1:3751364/1‑71 (MQ=255) gccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACtt > 1:4867200/1‑71 (MQ=255) gaagtcgacagccttggcatctaCGTTGATTTCATCTGCGCCATCAAc < 1:427880‑M1/25‑1 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGGTGc > 1:5021103/1‑52 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc > 1:2155839/1‑52 (MQ=255) gATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:1404258/1‑69 (MQ=255) gATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGt > 1:3111292/1‑68 (MQ=255) ctCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACg < 1:2484253/41‑1 (MQ=255) aTCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTgag < 1:3663714/71‑1 (MQ=255) aTCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTga < 1:5139575/70‑1 (MQ=255) tCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:949479/1‑67 (MQ=255) cATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:718621/1‑66 (MQ=255) cATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:537657/1‑66 (MQ=255) gccttggcatctaCGTTGATTTCATCTGCGCCATCaa < 1:2711958‑M1/24‑1 (MQ=255) aTTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTg > 1:1962859/1‑66 (MQ=255) aTTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGAt > 1:2074923/1‑70 (MQ=255) ttGCATGTGGCCTTTGATTTCATCTGCGCCATCAACGTAGa > 1:1444948/1‑41 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaa < 1:3658811/70‑1 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaa > 1:2242370/1‑70 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaa > 1:3916420/1‑70 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaa < 1:1515724/70‑1 (MQ=255) aTGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAAc < 1:2243570/71‑1 (MQ=255) tgtgGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaaa < 1:2664848/69‑1 (MQ=255) gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGAAGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGt > 1:4011647/1‑71 (MQ=255) tgGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAg > 1:5180572/1‑41 (MQ=255) tgGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTg < 1:1900618/71‑1 (MQ=255) ggCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTg > 1:5181891/1‑70 (MQ=255) gCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa < 1:1499835/70‑1 (MQ=255) gCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa < 1:478491/70‑1 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTg < 1:1418446/54‑1 (MQ=255) CGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTgaga > 1:3387709‑M1/1‑56 (MQ=255) CGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATg > 1:2072837‑M1/1‑71 (MQ=255) CGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATg < 1:2591805‑M1/71‑1 (MQ=255) | CTGCAACCGAAGCAATGATTTTTTCACGGGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATG > AP009048/3057651‑3057790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |