| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3057720 = | 46 (0.820) | 4 (0.080) | 3/88 | NT | 8.7% | coding (262/660 nt) | rpiA | ribosephosphate isomerase, constitutive |
| ? | AP009048 | 3057746 = | 44 (0.910) | coding (236/660 nt) | rpiA | ribosephosphate isomerase, constitutive | |||||
GGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGG > AP009048/3057679‑3057815 | ggTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGa < 1:4375678/71‑1 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGcc < 1:1973895/71‑1 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc > 1:418846/1‑70 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc > 1:2250687/1‑70 (MQ=255) aGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc < 1:1937623/70‑1 (MQ=255) gccgcgccgcCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAg > 1:2342235/1‑71 (MQ=255) cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGc > 1:1288798/1‑71 (MQ=255) cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGc > 1:5141703/1‑71 (MQ=255) cgccgccgcCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTg < 1:2105436/71‑1 (MQ=255) gccgccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTg < 1:4242479/70‑1 (MQ=255) ccgccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTc < 1:2163460/71‑1 (MQ=255) aacgaagtcgacagccttggcatctaCGTTGATTTCATCTGCGCCATCAACGt < 1:3163995‑M1/27‑1 (MQ=255) aacgaagtcgacagccttggcatctaCGTTGATTTCATCTGCGCCATCAACGt < 1:2717812‑M1/27‑1 (MQ=255) ccgccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGAc > 1:3751364/1‑71 (MQ=255) gccTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACtt > 1:4867200/1‑71 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGGTGc > 1:5021103/1‑52 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGc > 1:2155839/1‑52 (MQ=255) gATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:1404258/1‑69 (MQ=255) gATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGt > 1:3111292/1‑68 (MQ=255) aTCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTgag < 1:3663714/71‑1 (MQ=255) aTCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTga < 1:5139575/70‑1 (MQ=255) tCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:949479/1‑67 (MQ=255) cATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:718621/1‑66 (MQ=255) cATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGtt > 1:537657/1‑66 (MQ=255) aTTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTg > 1:1962859/1‑66 (MQ=255) aTTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGAt > 1:2074923/1‑70 (MQ=255) ttGCATGTGGCCTTTGATTTCATCTGCGCCATCAACGTAGa > 1:1444948/1‑41 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaa < 1:3658811/70‑1 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaa > 1:2242370/1‑70 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaa > 1:3916420/1‑70 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaa < 1:1515724/70‑1 (MQ=255) aTGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAAc < 1:2243570/71‑1 (MQ=255) tgtgGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaaa < 1:2664848/69‑1 (MQ=255) gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGAAGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGt > 1:4011647/1‑71 (MQ=255) tgGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAg > 1:5180572/1‑41 (MQ=255) tgGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTg < 1:1900618/71‑1 (MQ=255) ggCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTg > 1:5181891/1‑70 (MQ=255) gCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa < 1:478491/70‑1 (MQ=255) gCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa < 1:1499835/70‑1 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTg < 1:1418446/54‑1 (MQ=255) acgttgatggcgcagatgaaatcaacgTAGATGCCAAGGCTGTCGACTTCGtt < 1:3163995‑M2/26‑1 (MQ=255) acgttgatggcgcagatgaaatcaacgTAGATGCCAAGGCTGTCGACTTCGtt < 1:2717812‑M2/26‑1 (MQ=255) CGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTgaga > 1:3387709‑M1/1‑56 (MQ=255) CGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATg < 1:2591805‑M1/71‑1 (MQ=255) CGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATg > 1:2072837‑M1/1‑71 (MQ=255) gttgatggcgcagatgaaatcaacgTAGATGCCAAGGCTGTCGACTTc < 1:427880‑M2/23‑1 (MQ=255) GTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGc < 1:970495‑M1/71‑1 (MQ=255) ttgatggcgcagatgaaatcaacgTAGATGCCAAGGc < 1:2711958‑M2/13‑1 (MQ=255) TGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACtt < 1:2889350‑M1/45‑1 (MQ=255) TGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGcc < 1:4995219‑M1/70‑1 (MQ=255) ATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGa > 1:3715975‑M1/1‑70 (MQ=255) ATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTAGACTTCGTTgag < 1:838283‑M1/50‑1 (MQ=255) TTTCATCTGCTCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAgg < 1:626053‑M1/71‑1 (MQ=255) ttCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaa > 1:2595413/1‑53 (MQ=255) tCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGc < 1:2467771/70‑1 (MQ=255) tCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCt > 1:620365/1‑71 (MQ=255) cATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa > 1:4721805/1‑59 (MQ=255) cATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCtt > 1:1422200/1‑71 (MQ=255) aTCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGt < 1:156944/56‑1 (MQ=255) aTCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGaa < 1:2243230/59‑1 (MQ=255) tCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGcc < 1:4764470/62‑1 (MQ=255) cgcCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcagt > 1:2986606/1‑71 (MQ=255) cgcCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcag < 1:2470980/70‑1 (MQ=255) cATCAACGTAGATGCGAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcagttt < 1:3197752/70‑1 (MQ=255) atcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcag < 1:3225810‑M2/59‑1 (MQ=255) tcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaa < 1:3072474‑M2/36‑1 (MQ=255) tcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGt < 1:3283045‑M2/40‑1 (MQ=255) tcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTg > 1:3135844‑M2/7‑47 (MQ=255) caacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCg > 1:663440‑M2/6‑53 (MQ=255) caacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcagttttt > 1:3115594‑M2/6‑69 (MQ=255) aacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaa > 1:3152645‑M2/5‑40 (MQ=255) aacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCa < 1:2374120‑M2/33‑1 (MQ=255) aacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATg > 1:785949‑M2/5‑49 (MQ=255) aacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATg > 1:5006513‑M2/5‑49 (MQ=255) acgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaaa > 1:1144829‑M2/4‑40 (MQ=255) acgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcagtttttcagt < 1:5023326‑M2/68‑1 (MQ=255) acgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcagtttttcagt > 1:4122888‑M2/4‑71 (MQ=255) acgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCttttcagt > 1:388183‑M2/4‑63 (MQ=255) cgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTg < 1:3719717‑M2/69‑1 (MQ=255) cgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTg < 1:3183617‑M2/69‑1 (MQ=255) gTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGcc < 1:3102803‑M2/47‑1 (MQ=255) tAGATGCCAAGGCTGTCGACTTCGTTGAGATCaaaa > 1:4236354/1‑36 (MQ=255) tAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa < 1:1894838/42‑1 (MQ=255) tAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGa < 1:739919/42‑1 (MQ=255) tAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTgg < 1:910915/70‑1 (MQ=255) | GGTCAGCGCCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTGG > AP009048/3057679‑3057815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |