| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3839078 | 66 (1.130) | 4 (0.080) | 3/90 | NT | 6.5% | coding (663/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| ? | AP009048 | = 3839092 | 56 (1.080) | coding (677/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase | |||||
ACAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3839004‑3839078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgtcATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGA < AP009048/3839092‑3839024 ACAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAA < 1:1788346/71‑1ACAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAA > 1:4186486/1‑71ACAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGA < 1:4195012/70‑1 CAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAAT < 1:3121437/71‑1 CAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAA > 1:1615133/1‑70 CAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAA > 1:3042171/1‑70 AGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATG > 1:4963369/1‑71 AAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTC > 1:1975673/1‑71 GTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGT < 1:4943924/63‑1 GTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATG < 1:853596/62‑1 TTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAAT < 1:4390297/60‑1 TTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCATCCCTTTCAGTAA < 1:2612635/70‑1 TTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTC > 1:538113/1‑56 TTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAA > 1:4191499/1‑49 ATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGA < 1:4932914/46‑1 TGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCATCCCTTTCAGTAAGACATTC < 1:4820030/71‑1 AGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCATCCCTTTCAG > 1:2626846/1‑54 AGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCAACCCTTTCAG > 1:1797944/1‑54 ATGTGATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTT < 1:4421035/64‑1 TGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTA < 1:4936664/49‑1 TCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGA < 1:1217150/71‑1 TCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAG < 1:3275496/70‑1 TCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCAT > 1:4716044/1‑67 TCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATT < 1:4774215/55‑1 TCATCCCTTTCAGTAAGACATTCATAACATCCTGATCA < 1:3163783/38‑1 ACAGAAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3839004‑3839078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgtcATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGA < AP009048/3839092‑3839024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |