| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3839078 | 66 (1.130) | 4 (0.080) | 3/90 | NT | 6.5% | coding (663/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| ? | AP009048 | = 3839092 | 56 (1.080) | coding (677/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase | |||||
Only 100 of 101 total aligned reads displayed.
AAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTA > AP009048/3839008‑3839147 | aaaaaGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTC > 1:1975673‑M1/1‑71 (MQ=255) aaaaGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCt < 1:4203458/71‑1 (MQ=255) aaaaGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCt > 1:1153747/1‑71 (MQ=255) aaaGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCt > 1:1870332/1‑70 (MQ=255) aGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTAc > 1:3752338/1‑71 (MQ=255) gTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTg > 1:455562/1‑70 (MQ=255) gTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGa < 1:5231937/71‑1 (MQ=255) gTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGa < 1:1343729/71‑1 (MQ=255) ttGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGaa < 1:4671111/71‑1 (MQ=255) ttGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGaa < 1:5134975/71‑1 (MQ=255) ttGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGa < 1:5021329/70‑1 (MQ=255) gTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAg > 1:1561073/1‑71 (MQ=255) aTTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:3246447/1‑71 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCatccctttcagtaa < 1:2612635‑M1/70‑15 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAggg < 1:2042958/68‑1 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt < 1:593016/70‑1 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt < 1:4543616/70‑1 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTC > 1:538113‑M1/1‑56 (MQ=255) tCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:1217150‑M2/71‑3 (MQ=255) cTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:3275496‑M2/70‑3 (MQ=255) aTGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga > 1:4716044‑M2/1‑65 (MQ=255) tGAGTAAATATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta < 1:4384511/71‑1 (MQ=255) tGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCatccctttcagtaagacattc < 1:4820030‑M1/71‑22 (MQ=255) gAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCt < 1:1957250/50‑1 (MQ=255) tgTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt < 1:4696185/70‑1 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTa > 1:2988931/1‑51 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTa > 1:544448/1‑51 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt < 1:3858345/71‑1 (MQ=255) gTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt < 1:3897905/71‑1 (MQ=255) aaaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATcacat < 1:4421035‑M2/64‑6 (MQ=255) aaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt < 1:1009023/70‑1 (MQ=255) aGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCatccctttcag > 1:2626846‑M1/1‑43 (MQ=255) aGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCaaccctttcag > 1:1797944‑M1/1‑43 (MQ=255) tAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:377947/71‑1 (MQ=255) tAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:2310240/71‑1 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:4774215‑M2/55‑3 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:4159775/1‑71 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:1565932/1‑71 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:1396264/1‑71 (MQ=255) aTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:1367261/71‑1 (MQ=255) tGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAg > 1:1819057/1‑47 (MQ=255) gTTTATAAATACCCTGATCAGTATGTTATGAATGTCTTACTGAAAggg < 1:2430156/48‑1 (MQ=255) tttATAAATACCCTGATCAGGATGTTATGAATGTCTTa > 1:2995679/1‑38 (MQ=255) tttATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGa < 1:5241813/42‑1 (MQ=255) tttATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAg < 1:3320780/71‑1 (MQ=255) tataAATACCCTGATCAGGATGTTATGAATGTCTTACTGaaa > 1:3609037/1‑42 (MQ=255) tataAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt < 1:4913449/47‑1 (MQ=255) tataAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGa > 1:2194432/1‑68 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATgaca < 1:4936664‑M2/49‑5 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta < 1:5016183/52‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtgca < 1:232377/71‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtaca < 1:1316794/71‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtac > 1:4976994/1‑70 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtac < 1:2388998/70‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCT‑‑TGAGtacaa < 1:3794282/70‑1 (MQ=255) aaTACCCTGATCAGGATGTTATGAATGTCTTACTGaag > 1:364913/1‑37 (MQ=255) aTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta > 1:3661382/1‑49 (MQ=255) tACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaata > 1:2541727/1‑70 (MQ=255) cccTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:3826795/1‑51 (MQ=255) cTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTacaatacaat > 1:1819524/1‑70 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:3163783‑M2/38‑3 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt > 1:5346063/1‑46 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGta > 1:2027991/1‑60 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTg < 1:414754/47‑1 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt > 1:4173340/1‑57 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt > 1:2243902/1‑57 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAAttt < 1:2486313/69‑1 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTtat < 1:2868179/71‑1 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTta > 1:115177/1‑70 (MQ=255) tCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:4972152/1‑45 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt < 1:4237243/44‑1 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatacaa > 1:1900585/1‑64 (MQ=255) ggATGTTATTAATGTCTTACTGAAAGGGATGACATTAttttt > 1:4896702/1‑42 (MQ=255) ggATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:2509093/1‑42 (MQ=255) ggATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGc > 1:2266627/1‑44 (MQ=255) gATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt < 1:5162665/39‑1 (MQ=255) gATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAAt > 1:5049588/1‑71 (MQ=255) gTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTa > 1:5033269/1‑70 (MQ=255) ttATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc > 1:3895562/1‑64 (MQ=255) ttATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTaa < 1:2997069/70‑1 (MQ=255) tATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:5247352/41‑1 (MQ=255) aTGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:2652423/1‑41 (MQ=255) tGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGt < 1:752467/71‑1 (MQ=255) tGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGt > 1:4642363/1‑71 (MQ=255) gAATGTCTTACTGAAAGGGATgacattcataacatcctgatcagggtatttataaacattatctttactca < 1:4820030‑M2/71‑51 (MQ=255) gAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatacaa < 1:675456/53‑1 (MQ=255) aaTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:3769861/39‑1 (MQ=255) aTGTGatccctttcagtaagacattcataacatcctgatcagggtatttataaacattatcttt < 1:4421035‑M1/64‑60 (MQ=255) aTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGaa > 1:4458999/1‑71 (MQ=255) aTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGaa > 1:1431319/1‑71 (MQ=255) aTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGaa > 1:1052335/1‑71 (MQ=255) tGTCatccctttcagtaagacattcataacatcctgatcagggtattta < 1:4936664‑M1/49‑46 (MQ=255) tCatccctttcagtaagacattcataacatcctgatcagggtatttataaacattatctttactcataaga < 1:1217150‑M1/71‑70 (MQ=255) tCatccctttcagtaagacattcataacatcctgatcagggtatttataaacattatctttactcataag < 1:3275496‑M1/70‑69 (MQ=255) tCatccctttcagtaagacattcataacatcctgatcagggtatttataaacattatctttactcat > 1:4716044‑M1/1‑2 (MQ=255) tCatccctttcagtaagacattcataacatcctgatcagggtatttataaacatt < 1:4774215‑M1/55‑54 (MQ=255) tCatccctttcagtaagacattcataacatcctgatca < 1:3163783‑M1/38‑37 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc > 1:1871217/1‑55 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTa < 1:4980739/71‑1 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTa < 1:3958868/71‑1 (MQ=255) | AAAAAGCGTTGTCTATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTA > AP009048/3839008‑3839147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |