| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3839078 | 66 (1.130) | 4 (0.080) | 3/90 | NT | 6.5% | coding (663/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| ? | AP009048 | = 3839092 | 56 (1.080) | coding (677/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase | |||||
ATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAT > AP009048/3839022‑3839162 | aTTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:3246447/1‑71 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt < 1:4543616/70‑1 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt < 1:593016/70‑1 (MQ=255) tCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:1217150‑M2/71‑3 (MQ=255) cTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:3275496‑M2/70‑3 (MQ=255) aTGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga > 1:4716044‑M2/1‑65 (MQ=255) tGAGTAAATATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta < 1:4384511/71‑1 (MQ=255) tgTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt < 1:4696185/70‑1 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt < 1:3858345/71‑1 (MQ=255) gTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt < 1:3897905/71‑1 (MQ=255) aaaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATcacat < 1:4421035‑M2/64‑6 (MQ=255) aaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt < 1:1009023/70‑1 (MQ=255) gATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:991658/1‑56 (MQ=255) tAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:2310240/71‑1 (MQ=255) tAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:377947/71‑1 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:4774215‑M2/55‑3 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:1565932/1‑71 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:4159775/1‑71 (MQ=255) aaTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:1396264/1‑71 (MQ=255) aTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:1367261/71‑1 (MQ=255) tttATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAg < 1:3320780/71‑1 (MQ=255) tataAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt < 1:4913449/47‑1 (MQ=255) tataAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGa > 1:2194432/1‑68 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATgaca < 1:4936664‑M2/49‑5 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta < 1:5016183/52‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtgca < 1:232377/71‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtaca < 1:1316794/71‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtac < 1:2388998/70‑1 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtac > 1:4976994/1‑70 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCT‑‑TGAGtacaa < 1:3794282/70‑1 (MQ=255) aTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta > 1:3661382/1‑49 (MQ=255) tACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaata > 1:2541727/1‑70 (MQ=255) cccTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:3826795/1‑51 (MQ=255) cTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTacaatacaat > 1:1819524/1‑70 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATga < 1:3163783‑M2/38‑3 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt > 1:5346063/1‑46 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGta > 1:2027991/1‑60 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTg < 1:414754/47‑1 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt > 1:4173340/1‑57 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt > 1:2243902/1‑57 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAAttt < 1:2486313/69‑1 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTtat < 1:2868179/71‑1 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTta > 1:115177/1‑70 (MQ=255) tCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:4972152/1‑45 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt < 1:4237243/44‑1 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatacaa > 1:1900585/1‑64 (MQ=255) ggATGTTATTAATGTCTTACTGAAAGGGATGACATTAttttt > 1:4896702/1‑42 (MQ=255) ggATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:2509093/1‑42 (MQ=255) ggATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGc > 1:2266627/1‑44 (MQ=255) gATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt < 1:5162665/39‑1 (MQ=255) gATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAAt > 1:5049588/1‑71 (MQ=255) gTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTa > 1:5033269/1‑70 (MQ=255) ttATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc > 1:3895562/1‑64 (MQ=255) ttATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTaa < 1:2997069/70‑1 (MQ=255) tATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:5247352/41‑1 (MQ=255) aTGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCg > 1:2652423/1‑41 (MQ=255) tGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGt < 1:752467/71‑1 (MQ=255) tGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGt > 1:4642363/1‑71 (MQ=255) gAATGTCTTACTGAAAGGGATgacattcataacatcctgatcagggtatttataaacattatctttactca < 1:4820030‑M2/71‑51 (MQ=255) gAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatacaa < 1:675456/53‑1 (MQ=255) aaTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:3769861/39‑1 (MQ=255) aTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGaa > 1:1431319/1‑71 (MQ=255) aTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGaa > 1:1052335/1‑71 (MQ=255) aTGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGaa > 1:4458999/1‑71 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc > 1:1871217/1‑55 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTa < 1:3958868/71‑1 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTa < 1:4980739/71‑1 (MQ=255) ttACTGAAAGGGATgacattcataacatcctgatcagggtatttataaacattatctttactcataagaa < 1:2612635‑M2/70‑57 (MQ=255) ttACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTacaatacaat > 1:877118/1‑47 (MQ=255) ttACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTacaatacaat > 1:871055/1‑47 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaa < 1:3854586/68‑1 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaa > 1:5129462/1‑68 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaa > 1:3926131/1‑68 (MQ=255) cTGAAAGGGTTgacattcataacatcctgatcagggtatttataaacattatct > 1:1797944‑M2/1‑11 (MQ=255) cTGAAAGGGATgacattcataacatcctgatcagggtatttataaacattatct > 1:2626846‑M2/1‑11 (MQ=255) cTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGa > 1:227360/1‑71 (MQ=255) tGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGa > 1:2999855/1‑70 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTta > 1:2316324/1‑44 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACaa < 1:4481421/71‑1 (MQ=255) aGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACaaaa < 1:1071648/71‑1 (MQ=255) gggATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTaa < 1:2316691/50‑1 (MQ=255) gggATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACaaaa > 1:73309/1‑70 (MQ=255) gggATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAac < 1:3964377/71‑1 (MQ=255) gggATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAac < 1:3717598/71‑1 (MQ=255) ggATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAaca < 1:4016172/71‑1 (MQ=255) tGACATTATTTTTGCCTCGTGAGTACAATACAATTtat > 1:5100519/1‑38 (MQ=255) tGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAt > 1:3550938/1‑71 (MQ=255) tGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAt > 1:2681186/1‑71 (MQ=255) | ATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAT > AP009048/3839022‑3839162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |