| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3921069 | 82 (1.400) | 4 (0.080) | 3/90 | NT | 5.0% | intergenic (‑132/‑302) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 3921098 | 79 (1.530) | intergenic (‑161/‑273) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein | |||||
ATAGTCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3920994‑3921069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttaTCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCC < AP009048/3921098‑3921031 ATAGTCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTC < 1:1442817/71‑1 TAGTCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCA < 1:4244518/71‑1 GTCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT > 1:4214975/1‑71 GTCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT < 1:1165491/71‑1 TCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTT < 1:4148741/71‑1 CGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT > 1:339632/1‑69 AAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTT < 1:4582316/64‑1 AAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCA > 1:941762/1‑61 GAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT < 1:5315535/45‑1 AAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTATCAGATCGTTAGGTGGCTATAAGT > 1:5250420/1‑70 AAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTATCAGATCGTTAGGTGGCTATAAGT > 1:4587170/1‑70 AGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT > 1:1437634/1‑39 GGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT < 1:1703658/38‑1 GGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATT < 1:5364644/38‑1 CATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAAT < 1:2594133/71‑1 TGCTCTGGCTATGATTCGATTCAGCCTGTCATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGA < 1:3732842/71‑1 TGCTCTGGCTATGATTCGATTCAGCCTGTCATTTA < 1:1267393/35‑1 CATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCAT < 1:2585434/71‑1 CATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCAT < 1:5287390/71‑1 CATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAA > 1:3685965/1‑51 ATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATG < 1:4372315/71‑1 ATTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCA < 1:3109693/69‑1 TTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGC > 1:3493146/1‑71 TTTATCAGATCGTTAGGTGGCTATAAGTCACGCTAA < 1:569644/36‑1 TTTATCAGATCGTTAGGTGGCTATAAGTCACGATAAATGACAGGCTGAAT > 1:3524247/1‑50 TATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCC < 1:405364/70‑1 TATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCC < 1:3774777/70‑1 TATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAAT > 1:5285854/1‑53 TATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATC < 1:723772/49‑1 TATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGA < 1:1809123/46‑1 ATCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCAT < 1:964668/66‑1 ATAGTCGGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3920994‑3921069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttaTCAGATCGTTAGGTGGCTATAAGTCACGCTAAATGACAGGCTGAATCGAATCATAGCCAGAGCATGCC < AP009048/3921098‑3921031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |