| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3921069 | 82 (1.400) | 4 (0.080) | 3/90 | NT | 5.0% | intergenic (‑132/‑302) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 3921098 | 79 (1.530) | intergenic (‑161/‑273) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein | |||||
Only 100 of 133 total aligned reads displayed.
GGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAA > AP009048/3921000‑3921137 | gggAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAg > 1:3638152/1‑71 (MQ=255)gggAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAg > 1:4777389/1‑71 (MQ=255) aaaGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGt > 1:2055197/1‑70 (MQ=255) aaaGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGt > 1:3885737/1‑70 (MQ=255) aGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGAc > 1:2457378/1‑71 (MQ=255) aGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGAc > 1:2610556/1‑71 (MQ=255) aGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTta > 1:908039/1‑71 (MQ=255) aGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTta < 1:3570611/71‑1 (MQ=255) aGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTta < 1:3676534/71‑1 (MQ=255) aGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTta > 1:4972118/1‑71 (MQ=255) gACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTtat < 1:35089/71‑1 (MQ=255) acaGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGc > 1:4252198/1‑71 (MQ=255) acaGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGc > 1:670694/1‑71 (MQ=255) acaGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGc > 1:676671/1‑71 (MQ=255) aGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCa > 1:4974788/1‑71 (MQ=255) aGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCa > 1:3171940/1‑71 (MQ=255) cGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCAcc > 1:3772513/1‑71 (MQ=255) cGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCAcc > 1:2432963/1‑71 (MQ=255) gggTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCt < 1:3978274/70‑1 (MQ=255) gggTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTa < 1:1372010/71‑1 (MQ=255) ggTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCa > 1:4162614/1‑66 (MQ=255) gTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAAc > 1:2371831/1‑71 (MQ=255) tGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACg < 1:1104992/71‑1 (MQ=255) gAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGa > 1:1311871/1‑71 (MQ=255) aaGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAtcagatcgttaggtggctataagt > 1:5250420‑M1/1‑46 (MQ=255) aaGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGAt > 1:1359714/1‑71 (MQ=255) aaGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGAt > 1:384807/1‑71 (MQ=255) gccAGAGCATGCCCTGACTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCt > 1:4483992/3‑71 (MQ=255) gTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAg > 1:3571528/1‑45 (MQ=255) gTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCt < 1:5138962/71‑1 (MQ=255) tCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGa < 1:4663238/67‑1 (MQ=255) cAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGa > 1:3048588/1‑71 (MQ=255) ggCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:3774777‑M2/70‑3 (MQ=255) ggCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:405364‑M2/70‑3 (MQ=255) gCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaa > 1:3493146‑M2/1‑67 (MQ=255) cATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAtcagatcgttaggtggctataagtcacgctaaat < 1:2594133‑M1/71‑35 (MQ=255) cATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAAc > 1:2791787/1‑59 (MQ=255) cATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTg < 1:5192175/65‑1 (MQ=255) cATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaat < 1:4372315‑M2/71‑6 (MQ=255) aTGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatg < 1:5287390‑M2/71‑7 (MQ=255) aTGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAt < 1:964668‑M2/66‑2 (MQ=255) tGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAtcagatcgttaggtggctataagtcacgctaaatga < 1:3732842‑M1/71‑37 (MQ=255) tGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaat < 1:3109693‑M2/69‑6 (MQ=255) tGCTCTGGCTATGATTCGATTCAGCCTGTCATTTA < 1:1267393‑M1/35‑1 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGa > 1:2736226/1‑62 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc > 1:3036414/1‑70 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc < 1:2041485/70‑1 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc > 1:3815392/1‑70 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCg < 1:2718096/71‑1 (MQ=255) ctctGGCTATCATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACg > 1:1757810/1‑56 (MQ=255) tGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTta < 1:590832/40‑1 (MQ=255) tGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGa < 1:2116687/69‑1 (MQ=255) gCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGatata > 1:77053/1‑71 (MQ=255) gCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGatat < 1:4605160/70‑1 (MQ=255) gCTATGATTCGATTCAGCCTGTCATATAGCGTGACtt < 1:1474156/37‑1 (MQ=255) cTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGata < 1:186217/68‑1 (MQ=255) tATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATAtc > 1:2348071/1‑71 (MQ=255) aTGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc < 1:1281972/62‑1 (MQ=255) aTGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATAtct > 1:33509/1‑71 (MQ=255) tGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGAt > 1:3110757/1‑49 (MQ=255) attcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCtt < 1:787539/71‑1 (MQ=255) attcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCtt < 1:4458431/71‑1 (MQ=255) ttcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTa > 1:2798558/1‑71 (MQ=255) ttcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTa > 1:4204832/1‑71 (MQ=255) tcgattcAGCCTGTCATTTAGCGTGACTTATAGCCAc > 1:1722831/1‑37 (MQ=255) tcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:2405677/1‑71 (MQ=255) cgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:3801080/1‑70 (MQ=255) cgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:2951411/1‑70 (MQ=255) cgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:133810/1‑70 (MQ=255) cgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:1811597/1‑70 (MQ=255) gattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCa > 1:144986/1‑71 (MQ=255) attcAGCCTGTCATTTATCGTGACTTATAGCCACCTAACGATCTGAtaaa > 1:3524247‑M2/1‑46 (MQ=255) tcAGCCTGTCATTTAGCGTGACTTATAGCCACCTaa > 1:3184927/1‑36 (MQ=255) tcAGCCTGTCATTTAGCGTGACTTATAGCCACCTa > 1:1395412/1‑35 (MQ=255) tcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:1809123‑M2/46‑3 (MQ=255) cAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTcc > 1:3008715/1‑71 (MQ=255) cTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGtt < 1:4324413/71‑1 (MQ=255) gTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGtttt > 1:4471717/1‑71 (MQ=255) tCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatgacaggctgaatcgaatcatagccagagca < 1:3732842‑M2/71‑36 (MQ=255) cATTTAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagcat < 1:2585434‑M1/71‑66 (MQ=255) cATTTAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagcat < 1:5287390‑M1/71‑66 (MQ=255) cATTTAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaa > 1:3685965‑M1/1‑6 (MQ=255) cATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGa > 1:5170948/1‑45 (MQ=255) aTTTAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagcatg < 1:4372315‑M1/71‑67 (MQ=255) aTTTAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagca < 1:3109693‑M1/69‑65 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatgacaggctgaatcgaatcatagccagagcatg < 1:2594133‑M2/71‑38 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGat < 1:5345769/45‑1 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTa < 1:77249/71‑1 (MQ=255) tttAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagcatgc > 1:3493146‑M1/1‑4 (MQ=255) tttAtcagatcgttaggtggctataagtcacgctaa < 1:569644‑M1/36‑33 (MQ=255) tttATCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGatat < 1:2744451/46‑1 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGAtaaa < 1:569644‑M2/36‑5 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:4711135/1‑54 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGt > 1:1074993/1‑68 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACAACTCCTGTTTTGTa > 1:5234216/1‑69 (MQ=255) tAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagcatgcc < 1:405364‑M1/70‑69 (MQ=255) tAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaat > 1:5285854‑M1/1‑2 (MQ=255) tAtcagatcgttaggtggctataagtcacgctaaatgacaggctgaatc < 1:723772‑M1/49‑48 (MQ=255) tAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCAGatatat > 1:3893593/1‑46 (MQ=255) atcagatcgttaggtggctataagtcacgctaaatgacaggctgaatcgaatcatagccagagcat < 1:964668‑M1/66‑66 (MQ=255) | GGGAAAAGCAGACACAGCGGGGTGAAGTCAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAA > AP009048/3921000‑3921137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |