| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3921069 | 82 (1.400) | 4 (0.080) | 3/90 | NT | 5.0% | intergenic (‑132/‑302) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 3921098 | 79 (1.530) | intergenic (‑161/‑273) | yiaG/yiaF | predicted transcriptional regulator/conserved hypothetical protein | |||||
Only 100 of 126 total aligned reads displayed.
CAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGAAGGCG > AP009048/3921028‑3921168 | cAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGa > 1:3048588/1‑71 (MQ=255) aGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGa > 1:3606095/1‑70 (MQ=255) aGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGa > 1:4104085/1‑70 (MQ=255) ggCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:3774777‑M2/70‑3 (MQ=255) ggCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:405364‑M2/70‑3 (MQ=255) cATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaat < 1:4372315‑M2/71‑6 (MQ=255) aTGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatg < 1:2585434‑M2/71‑7 (MQ=255) aTGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatg < 1:5287390‑M2/71‑7 (MQ=255) aTGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAt < 1:964668‑M2/66‑2 (MQ=255) tGCTCTGGCTATGATTCGATTCATCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGc < 1:1465029/71‑1 (MQ=255) tGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaat < 1:3109693‑M2/69‑6 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGa > 1:2736226/1‑62 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc < 1:2041485/70‑1 (MQ=255) ctctGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc > 1:3815392/1‑70 (MQ=255) tGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGata > 1:3818772/1‑71 (MQ=255) gCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGatata > 1:77053/1‑71 (MQ=255) gCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGatat < 1:4605160/70‑1 (MQ=255) tATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATAtc > 1:2348071/1‑71 (MQ=255) aTGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGcc < 1:1281972/62‑1 (MQ=255) aTGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATAtct > 1:2988520/1‑71 (MQ=255) attcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta > 1:5285854‑M2/1‑51 (MQ=255) attcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCtt < 1:2773352/71‑1 (MQ=255) attcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCtt < 1:4458431/71‑1 (MQ=255) attcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCtt < 1:787539/71‑1 (MQ=255) ttcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTa > 1:4204832/1‑71 (MQ=255) ttcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTa > 1:2798558/1‑71 (MQ=255) tcgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:2405677/1‑71 (MQ=255) cgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:2951411/1‑70 (MQ=255) cgattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:2019290/1‑70 (MQ=255) gattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:723772‑M2/49‑3 (MQ=255) gattcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCa > 1:144986/1‑71 (MQ=255) attcAGCCTGTCATTTATCGTGACTTATAGCCACCTAACGATCTGAtaaa > 1:3524247‑M2/1‑46 (MQ=255) ttcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatg > 1:3685965‑M2/1‑45 (MQ=255) tcAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGAta < 1:1809123‑M2/46‑3 (MQ=255) cAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTcc > 1:3008715/1‑71 (MQ=255) aGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCAc > 1:2649674/1‑67 (MQ=255) aGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCt > 1:2159263/1‑71 (MQ=255) ccTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGt > 1:3089784/1‑71 (MQ=255) cTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGtt < 1:4324413/71‑1 (MQ=255) gTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGtttt > 1:4471717/1‑71 (MQ=255) tCATTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatgacaggctgaatcgaatcatagccagagca < 1:3732842‑M2/71‑36 (MQ=255) cATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGa > 1:5170948/1‑45 (MQ=255) cATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGtttt < 1:1367019/69‑1 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGAtaaatgacaggctgaatcgaatcatagccagagcatg < 1:2594133‑M2/71‑38 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGat < 1:5345769/45‑1 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTa < 1:77249/71‑1 (MQ=255) aTTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTa < 1:4318808/71‑1 (MQ=255) tttATCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGatat < 1:2744451/46‑1 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTAc > 1:4711135/1‑54 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGt > 1:1074993/1‑68 (MQ=255) ttAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACAACTCCTGTTTTGTa > 1:5234216/1‑69 (MQ=255) tAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCAGatatat > 1:3893593/1‑46 (MQ=255) aGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCg < 1:3445958/39‑1 (MQ=255) gCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGGAAAGAt < 1:6993/71‑1 (MQ=255) gCGTGACTTATAGCCACCTAACGATCTGATAAATCCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAt < 1:1185238/71‑1 (MQ=255) tGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAttt > 1:3422727/1‑70 (MQ=255) tGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAt < 1:3513479/68‑1 (MQ=255) aCTTATAGCCACCTAACGATCTGAtaaatgacaggctgaatcgaatcatagccagagcatgccctgactt > 1:4587170‑M2/1‑24 (MQ=255) aCTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCg > 1:2090458/1‑70 (MQ=255) aCTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGa < 1:1226265/71‑1 (MQ=255) aCTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGa < 1:3268202/71‑1 (MQ=255) ataGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCAc > 1:3159895/1‑45 (MQ=255) ataGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGaaaa > 1:2839733/1‑70 (MQ=255) ataGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGaaa < 1:3178162/69‑1 (MQ=255) gCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCt < 1:5175941/70‑1 (MQ=255) gCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCt < 1:4484673/70‑1 (MQ=255) ccACCTAACGATCTGATAAATGCCGATATATCTCtt < 1:1830122/36‑1 (MQ=255) ccACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTa < 1:4817952/53‑1 (MQ=255) ccACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTa < 1:1353864/53‑1 (MQ=255) ccACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTa < 1:1835968/70‑1 (MQ=255) aCCTAACGATCTGATAAATGCCGATATATCTCTTACCACTc < 1:2212559/41‑1 (MQ=255) aCCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAAcc < 1:1576768/71‑1 (MQ=255) ccTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTaa > 1:887148/1‑68 (MQ=255) cTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTg < 1:4558037/42‑1 (MQ=255) cTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTaa < 1:574830/50‑1 (MQ=255) cTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAtt < 1:3063953/55‑1 (MQ=255) tAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGt > 1:345697/1‑47 (MQ=255) tAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAt > 1:78174/1‑53 (MQ=255) tAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAt > 1:2906071/1‑53 (MQ=255) tAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCt > 1:903880/1‑64 (MQ=255) aaCTATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCt > 1:1744607/1‑71 (MQ=255) aaCGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTa > 1:629551/1‑64 (MQ=255) aaCGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCt > 1:4173904/1‑71 (MQ=255) aCGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAAt > 1:1861947/1‑60 (MQ=255) cGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGc > 1:2574871/1‑71 (MQ=255) gATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGc > 1:1666271/1‑70 (MQ=255) aTCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTa < 1:3812259/43‑1 (MQ=255) tCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTaaa > 1:3460333/1‑44 (MQ=255) tGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAAt > 1:3611650/1‑54 (MQ=255) gATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGa < 1:2044866/43‑1 (MQ=255) gATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAAt > 1:4278048/1‑53 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGAt < 1:3692098/43‑1 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGATAATCTAACCTTCTGCGAAGGc < 1:2618941/70‑1 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCt > 1:5360544/1‑54 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGa < 1:2973816/66‑1 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGa < 1:2241149/66‑1 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGa < 1:2266418/66‑1 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGAAg < 1:2767871/68‑1 (MQ=255) aTAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGAAGGCg > 1:1817632/1‑71 (MQ=255) aTAAATGCAGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCg < 1:3024741/65‑1 (MQ=255) | CAGGGCATGCTCTGGCTATGATTCGATTCAGCCTGTCATTTAGCGTGACTTATAGCCACCTAACGATCTGATAAATGCCGATATATCTCTTACCACTCCTGTTTTGTAAAGATTTCGAAAATCTAACCTTCTGCGAAGGCG > AP009048/3921028‑3921168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |