New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 4278235 =48 (0.820)4 (0.080) 4/90 NT 8.1% coding (521/537 nt) ssb Single‑stranded DNA‑binding protein
?AP009048 4278260 = 49 (0.950)intergenic (+9/+90) ssb/yjcB Single‑stranded DNA‑binding protein/predicted inner membrane protein

GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/4278307‑4278235
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcatTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTCC  >  AP009048/4278260‑4278329
                                                                                                                                               
GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGT                                                                           >  1:2017748/1‑70
GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATG                                                                            <  1:1187247/69‑1
  AGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT                                                                        >  1:3904438/1‑71
                           ACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATG                                                                            >  1:1897239/1‑42
                            CAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT                                                                        >  1:2084992/1‑45
                            CAATATAACCTATTGTTTTAATGACAAATCAGAACGGAAT                                                                             >  1:62926/1‑40
                                              TAATGACAAATCAGAACGGAATGTCATTAAAACAATAGGTTATATTGT                                                   <  1:4696194/48‑1
                                               AATGACAAATCAGAACGGAATGTCATCAAAACAATAGGTTATATT                                                     <  1:1989145/45‑1
                                                  GACAAATCAGAACGGAATGTCATTAAAACAATAGGTTATATTG                                                    <  1:3521661/43‑1
                                                          AGAACGGAATGTCATTAAAACAATAGGTTATATTGTT                                                  >  1:3534270/1‑37
                                                                   TGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGC                              <  1:1345884/48‑1
                                                                     TCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCC     >  1:908699/1‑71
                                                                      CATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCT    >  1:993941/1‑71
                                                                       ATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTC   >  1:3329402/1‑71
                                                                       ATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTC   >  1:940363/1‑71
                                                                        TTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTCC  <  1:3258582/71‑1
                                                                        TTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCT    <  1:220198/69‑1
                                                                                                                                               
GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/4278307‑4278235
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcatTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTCC  >  AP009048/4278260‑4278329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.