| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4278235 = | 48 (0.820) | 4 (0.080) | 4/90 | NT | 8.1% | coding (521/537 nt) | ssb | Single‑stranded DNA‑binding protein |
| ? | AP009048 | 4278260 = | 49 (0.950) | intergenic (+9/+90) | ssb/yjcB | Single‑stranded DNA‑binding protein/predicted inner membrane protein | |||||
GGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCT > AP009048/4278165‑4278305 | ggcgCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTtgatga > 1:4941173/1‑71 (MQ=255)ggaggcttcttttttatggctggcagatgctttaatcatccaccttaaaacaatataacctattgttttaa < 1:3258582‑M1/1‑1 (MQ=255) gaggcttcttttttatggctggcagatgctttaatcatccaccttaaaacaatataacctattgttttaAt > 1:3329402‑M1/70‑71 (MQ=255) gaggcttcttttttatggctggcagatgctttaatcatccaccttaaaacaatataacctattgttttaAt > 1:940363‑M1/70‑71 (MQ=255) aggcttcttttttatggctggcagatgctttaatcatccaccttaaaacaatataacctattgttttaa < 1:220198‑M1/1‑1 (MQ=255) aggcttcttttttatggctggcagatgctttaatcatccaccttaaaacaatataacctattgttttaATg > 1:993941‑M1/69‑71 (MQ=255) ggcttcttttttatggctggcagatgctttaatcatccaccttaaaacaatataacctattgttttaATGa > 1:908699‑M1/68‑71 (MQ=255) gcgcAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTtgatgatga < 1:1375784/71‑1 (MQ=255) gTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTc < 1:2207449/71‑1 (MQ=255) tcGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTtgatgatga < 1:5161750/63‑1 (MQ=255) tcGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGt > 1:1394341/1‑71 (MQ=255) gCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTc > 1:722137/1‑71 (MQ=255) gCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTc > 1:2500209/1‑71 (MQ=255) cccGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGACGCCGATGGACTTTGATGATGACATTCCGTTc < 1:1877307/70‑1 (MQ=255) cccGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGACGCCGATGGACTTTGATGATGACATTCCGTTc < 1:1883281/70‑1 (MQ=255) gcagcaGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTtgatga > 1:1509227/1‑54 (MQ=255) gctttaatcatccaccttaaaacaatataacctattgttttaATGACa < 1:1345884‑M1/6‑1 (MQ=255) tCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTaa < 1:455452/69‑1 (MQ=255) cGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTtgatgatga > 1:1847300/1‑43 (MQ=255) cGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAAc > 1:3994327/1‑70 (MQ=255) ggCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACaa > 1:3112491/1‑71 (MQ=255) ggCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACaa < 1:2925753/71‑1 (MQ=255) gCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACa < 1:3909894/69‑1 (MQ=255) gCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAAt < 1:334842/71‑1 (MQ=255) gcCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTaaaa > 1:2816798/1‑62 (MQ=255) gcCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTa < 1:1682427/59‑1 (MQ=255) cGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTta > 1:3110999/1‑70 (MQ=255) cGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTta > 1:3979845/1‑70 (MQ=255) tCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTatat < 1:2903841/71‑1 (MQ=255) cTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATAtt > 1:259104/1‑71 (MQ=255) tAACGAGCCGCCGATGGACTTTGATGATGACATTCCg < 1:4677339/37‑1 (MQ=255) tAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGa < 1:1920716/43‑1 (MQ=255) tAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTc < 1:776857/49‑1 (MQ=255) tAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTg > 1:3229304/1‑71 (MQ=255) aCGAGCCGCCGATGGACTTTGATGATTACATTCCGTTc < 1:4074326/38‑1 (MQ=255) aCGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATAtt < 1:2292735/68‑1 (MQ=255) aCGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGtt > 1:5245010/1‑71 (MQ=255) aCGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGtt < 1:4045061/71‑1 (MQ=255) aCGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGt > 1:536436/1‑70 (MQ=255) cGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGttt < 1:5037188/71‑1 (MQ=255) aacaatataacctattgttttaATGACATTCCGTTCt > 1:3534270‑M1/23‑37 (MQ=255) acaatataacctattgttttaATGACATTCCGTTCTGATTTGTCATTa < 1:4696194‑M1/27‑1 (MQ=255) caatataacctattgttttaATGACATTCCGTTCTGATTTGTc < 1:3521661‑M1/23‑1 (MQ=255) ccgccgATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAg < 1:4616044/71‑1 (MQ=255) aatataacctattgttttgATGACATTCCGTTCTGATTTGTCAtt < 1:1989145‑M1/26‑1 (MQ=255) cgccgATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAgg < 1:1903062/71‑1 (MQ=255) cgccgATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAgg > 1:763838/1‑71 (MQ=255) gccgATGGACTTTGATGATGACATTCCGTTCTGAtt < 1:836814/36‑1 (MQ=255) gccgATGGACTTTGATGATGACATTCCGTTCTGATTTGt < 1:5230094/39‑1 (MQ=255) gccgATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGt < 1:4877799/71‑1 (MQ=255) ccgATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGCTg > 1:2618069/1‑71 (MQ=255) ccgATGGACTTTGATGACGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTg > 1:384301/1‑71 (MQ=255) cgATGGACTTTGATGATGACATTCCTTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTg > 1:3595569/1‑70 (MQ=255) cgATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGttt > 1:5158732/1‑63 (MQ=255) aTGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGt < 1:4191789/51‑1 (MQ=255) aTGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGt < 1:4742949/59‑1 (MQ=255) ggACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTtat > 1:3642211/1‑52 (MQ=255) ggACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTta > 1:863524/1‑51 (MQ=255) gACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGgatga < 1:3907566/70‑1 (MQ=255) aCTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGga < 1:184476/66‑1 (MQ=255) aCTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGAtt < 1:128204/71‑1 (MQ=255) cTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATAtt > 1:2737194/1‑52 (MQ=255) tttGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGgatgat > 1:2037683/1‑68 (MQ=255) ttGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGt < 1:1989845/52‑1 (MQ=255) tgatgatgaCATTCCGTTCTGATTTGTCATTAAAACAATAGGTtata > 1:558413/1‑47 (MQ=255) tgatgatgaCATTCCGTTCTGATTTGTCATTAAAACAATAGGTtata > 1:3562741/1‑47 (MQ=255) tgatgatgaCATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGtt > 1:4903089/1‑52 (MQ=255) tgatgaCATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCAt > 1:924942/1‑71 (MQ=255) gatgaCATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATc > 1:4093358/1‑71 (MQ=255) ATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTg > 1:2084992‑M1/1‑45 (MQ=255) ATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCt > 1:3904438‑M1/1‑71 (MQ=255) | GGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGATTTGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCT > AP009048/4278165‑4278305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |