New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	1668917 =	58 (0.960)	10 (0.170)	9/230	NT	13.4%	coding (60/780 nt)	U712_08600	Flagellar biosynthetic protein fliR
	?	CP006881	= 1669509	72 (1.200)					coding (652/780 nt)	U712_08600	Flagellar biosynthetic protein fliR

CTCATCTATCTCCAAAGAGGGCGGTTTATCAATGGTGCTGAAACAAATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/1669046‑1668917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAGGCAGACCGACCACAAATACATTTAACTGCGGAACAGTTCGAGCCACGATACCTAATGCTAAATCAACTAGAAACAAACTGGCCACAA  <  CP006881/1669509‑1669420                                                                                                                                                                                                                              CTCATCTATCTCCAAAGAGGGCGGTTTATCAATGGTGCTGAAACAAATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGAC                                                                                   >  6:158580/1‑139         TCTCCAAAGAGGGCGGTTTATCAATGGTGCTGAAACAAATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCAC                                                                            >  8:201359/1‑138                  AGGGCGGTTTATAAATGGTGCTGAAACAAATGACCGCAAGAAAACAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTT                                                                  <  1:129250/139‑1                                              AATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTTAACTGCGGAACAGTTCGAGCCACG                                          <  7:279783/135‑1                                              AATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTTAACTGCGGAACAGTTCGAGCCACG                                          >  8:279783/1‑135                                              AATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTTAACTGCGGAA                                                        >  7:212342/1‑121                                              AATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTTAACTGCGGAA                                                        <  8:212342/121‑1                                                           atatAAGCAATAACTATGCGATGAACAGGTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAATATAAAAGGCAGACCGACCACAAATACATTTAACTGCGTAACAGTTCGAGCCTCGATACCTAATGCTAAAT                          <  6:331821/134‑1                                                                        CTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTTAACTGCGGAACAGTTCGAGCCACGATACCTAATGCTAAATCAACTAGAAACAAA            <  7:201359/139‑1                                                                                  AACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAAAAGGCAGACCGACCACAAATACATTTAACTGCGGAACAGTTCGAGCCACGATACCTAATGCTAAATCAACTAGAAACAAACTGGCCACAA  >  3:43750/1‑139                                                                                                                                                                                                                              CTCATCTATCTCCAAAGAGGGCGGTTTATCAATGGTGCTGAAACAAATGACCGCAAGAAAAAAAGCAAAACCTATGCGATGAACAGCTGGCACATTTCGATGTCCAAATAGCGGAATCGTTACAAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/1669046‑1668917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAGGCAGACCGACCACAAATACATTTAACTGCGGAACAGTTCGAGCCACGATACCTAATGCTAAATCAACTAGAAACAAACTGGCCACAA  <  CP006881/1669509‑1669420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.