New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	1668917 =	58 (0.960)	10 (0.170)	9/230	NT	13.4%	coding (60/780 nt)	U712_08600	Flagellar biosynthetic protein fliR
	?	CP006881	= 1669509	72 (1.200)					coding (652/780 nt)	U712_08600	Flagellar biosynthetic protein fliR

TCGACGATTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAGCACTATA  >  CP006881/1668791‑1669053                                                                                                                               |                                                                                                                                         tCGACGATTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTaa                                                                                                                                <  7:7130/137‑1 (MQ=255)   gacgaTTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGAt                                                                                                                            >  4:206743/1‑139 (MQ=255)    acgaTTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGAtt                                                                                                                           <  8:318574/139‑1 (MQ=255)    acgaTTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGAtt                                                                                                                           >  6:335267/1‑139 (MQ=255)    acgaTTCTTTCATTTACAACAGAGCTGTTTTATAATTTAAATAGTTTTGCAGGGTAATGTTGAGAAGAATTCAATTATTGAATTATTTCCAGCTTTTTTATTGGTTTTTATTAGTATCGGTGCTTTTTTTGTTAAGAt                                                                                                                            >  6:97119/1‑138 (MQ=255)         tCTTTCAATTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGTTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGc                                                                                                                       >  2:256919/1‑138 (MQ=255)               aTTTACAACAGAGGTGGTTTCTAATTTTAATCGTTTTGCAGGTCAATTTAGAGATGAATTCAATTATAGACTTATTTCGTGGTTTTTTATTGTATTTTATTAGAATCTCTGCTTTTTTTGTATCGATTCCGCTATTTgg                                                                                                                <  8:139269/139‑1 (MQ=255)                 ttACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGa                                                                                                               >  5:269887/1‑138 (MQ=255)                  tACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTTTTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCGGGTTTTTTTGTAACGATTCCGCTATTTGGCCa                                                                                                             >  6:3705/1‑139 (MQ=255)                          agCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAAtg                                                                                                     >  1:186037/1‑139 (MQ=255)                          agCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAAtg                                                                                                     >  2:297265/1‑139 (MQ=255)                               ttttCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGc                                                                                                  >  8:201010/1‑137 (MQ=255)                               ttttCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGc                                                                                                  >  8:196139/1‑137 (MQ=255)                                     ttgtggccagtttgtttctagttgatttagcattaggtatcgtggctcgaactgttccgcagttaaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGtt                                                                                          >  3:43750‑M1/91‑139 (MQ=255)                                      aTTTAACTCGTTTTGCAGGGTAATGTAGAGATGACTTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGtt                                                                                          <  4:214609/138‑1 (MQ=255)                                           aaTCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGc                                                                                    <  1:297265/139‑1 (MQ=255)                                            aTCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCa                                                                                   >  2:224878/1‑139 (MQ=255)                                               tttgtttctagttgatttagcattaggtatcgtggctcgaactgttccgcagttaaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAg                                                                                <  7:201359‑M1/59‑1 (MQ=255)                                                ttttGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAgg                                                                               >  4:261078/1‑139 (MQ=255)                                                        ggTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCtt                                                                       >  8:117050/1‑139 (MQ=255)                                                          tAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCtttt                                                                     >  6:26872/1‑139 (MQ=255)                                                           aaTGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCttttt                                                                    >  8:16094/1‑139 (MQ=255)                                                             tGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGTTTTTTATTAGAATCACTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCttttttt                                                                  >  7:157929/1‑139 (MQ=255)                                                             atttagcattaggtatcgaggctcgaactgttacgcagttaaatgtatttgtggtcggtctgccttTTATATTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCACCTGTTCATCGCATAGTTAttgcttatat                                                                   <  6:331821‑M1/72‑5 (MQ=255)                                                                  agaTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGTACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGc                                                             >  2:258000/1‑139 (MQ=255)                                                                  agaTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGc                                                             >  3:184902/1‑139 (MQ=255)                                                                  agaTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGc                                                             >  3:52652/1‑139 (MQ=255)                                                                    aTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGcc                                                                                                 >  5:329781/1‑101 (MQ=255)                                                                    aTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGcc                                                                                                 <  6:329781/101‑1 (MQ=255)                                                                    aTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCgg                                                           >  6:230348/1‑139 (MQ=255)                                                                    aTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCgg                                                           >  5:42423/1‑139 (MQ=255)                                                                    aTGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGACAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCgg                                                           >  1:89805/1‑139 (MQ=255)                                                                       aaTTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCa                                                        >  3:291174/1‑139 (MQ=255)                                                                         ttCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      >  3:195365/1‑139 (MQ=255)                                                                         ttCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      >  2:254541/1‑139 (MQ=255)                                                                         ttCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      >  8:264927/1‑139 (MQ=255)                                                                             cgtggctcgaactgttccgcagttaaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      >  8:279783‑M1/51‑135 (MQ=255)                                                                             cgtggctcgaactgttccgcagttaaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      <  7:279783‑M1/85‑1 (MQ=255)                                                                              ttattGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGttt                                                 >  8:280491/1‑139 (MQ=255)                                                                                    aCTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCAc                                           <  7:280491/139‑1 (MQ=255)                                                                                    aCTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCAc                                           <  5:335267/139‑1 (MQ=255)                                                                                      ttATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCa                                         >  3:43342/1‑139 (MQ=255)                                                                                        aTTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCTGTCATTTGTTTCAGCAc                                           >  2:192951/1‑135 (MQ=255)                                                                                        aTTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCAc                                           <  1:192951/135‑1 (MQ=255)                                                                                           ttccgcagttaaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      <  8:212342‑M1/85‑1 (MQ=255)                                                                                           ttccgcagttaaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCAtt                                                      >  7:212342‑M1/37‑121 (MQ=255)                                                                                                    tttATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGcc                            <  6:269887/138‑1 (MQ=255)                                                                                                    tttATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGcc                            <  4:184902/138‑1 (MQ=255)                                                                                                    tttATTGGGTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGcc                            <  5:217503/138‑1 (MQ=255)                                                                                                     aaatgtatttgtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTGTTTTCTTGCGGTCATTTGTTTCAGCACCATTTATAAACCGCCct                          <  1:129250‑M1/113‑1 (MQ=255)                                                                                                        ttGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCctct                        <  5:202522/138‑1 (MQ=255)                                                                                                          ggTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCttt                      <  3:206743/138‑1 (MQ=255)                                                                                                          ggTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCttt                      <  1:97280/138‑1 (MQ=255)                                                                                                            tttttATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGga                   <  7:16094/139‑1 (MQ=255)                                                                                                              tttATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGccc                           <  2:83611/129‑1 (MQ=255)                                                                                                              tttATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGccc                           >  1:83611/1‑129 (MQ=255)                                                                                                               gtggtcggtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGgaga                 >  8:201359‑M1/17‑138 (MQ=255)                                                                                                                     gAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGa          <  4:52652/139‑1 (MQ=255)                                                                                                                      gtctgccttTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         >  6:158580‑M1/10‑139 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTCACGAGTCCGCTATTTGGACATCGAAATGTGCCAGCTGTGCATAGCATAGGTTTTGCTTTTTTTCTTGCGGTAATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGCTGAg         <  1:150702/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  2:186037/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  1:256919/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  1:254541/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  7:201010/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  7:196139/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  7:117050/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  6:42423/139‑1 (MQ=255)                                                                                                                      aaTCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAg         <  4:167230/139‑1 (MQ=255)                                                                                                                              cTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAGCACtata  <  7:82341/138‑1 (MQ=255)                                                                                                                               |                                                                                                                                         TCGACGATTCTTTCATTTACAACAGAGCTGTTTTCTAATTTAAATCGTTTTGCAGGGTAATGTAGAGATGAATTCAATTATTGACTTATTTCCTGCTTTTTTATTGGTTTTTATTAGAATCTCTGCTTTTTTTGTAACGATTCCGCTATTTGGACATCGAAATGTGCCAGCTGTTCATCGCATAGGTTTTGCTTTTTTTCTTGCGGTCATTTGTTTCAGCACCATTGATAAACCGCCCTCTTTGGAGATAGATGAGCACTATA  >  CP006881/1668791‑1669053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.