New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	1668917 =	58 (0.960)	10 (0.170)	9/230	NT	13.4%	coding (60/780 nt)	U712_08600	Flagellar biosynthetic protein fliR
	?	CP006881	= 1669509	72 (1.200)					coding (652/780 nt)	U712_08600	Flagellar biosynthetic protein fliR

CAATGTTTATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAATG  >  CP006881/1669384‑1669639                                                                                                                              |                                                                                                                                   cAATGTTTATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTGCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTGTAATGATCGCTGt                                                                                                                       >  4:88304/1‑139 (MQ=255)   aTGTTTATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGt                                                                                                                       >  7:256784/1‑137 (MQ=255)   aTGTTTATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGt                                                                                                                       >  8:152932/1‑137 (MQ=255)      tttATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGtt                                                                                                                  <  6:226883/139‑1 (MQ=255)      tttATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGt                                                                                                                   <  6:308940/138‑1 (MQ=255)        tattatCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGttt                                                                                                                 >  6:134379/1‑138 (MQ=255)              cGCTTTTCAATTGTCAGCTCCGGTTGTGTCCAGTTTGTTTCTAGTTGACTTAGCATTAGGTATCGTTGCTCGAACTGTTCAGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCATTATCATTATg                                                                                                          <  2:308648/139‑1 (MQ=255)               gCTTTTAAAATGTCAGCGCCGGTTGTGGACAGTTTGTTTCTAGTTGATTTAGCATTATGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATg                                                                                                          <  8:119633/138‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTTCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  8:180705/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCGTTTAAAGATCGCTGTCAGTTTCATTATTCt                                                                                                        >  3:183205/1‑139 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATgac                                                                                                        >  1:240257/1‑137 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGc                                                                                                         >  3:226389/1‑138 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  5:134379/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        >  3:326093/1‑139 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  8:166958/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  1:269861/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  1:215269/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  7:83895/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  4:64298/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  3:226000/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  4:326093/139‑1 (MQ=255)                cTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCAGCAGTTAAATGTATTTGTGGTCGGGCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  8:221371/139‑1 (MQ=255)                   ttgaaaTGTCAGAGCCTGTTGTGGCCAGTATGTTTCTAGTTGATTTAGCATTAGGTATAGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCa                                                                                                      <  8:196782/135‑1 (MQ=255)                   ttCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCa                                                                                                      <  3:127031/138‑1 (MQ=255)                   ttCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCa                                                                                                      <  4:226389/138‑1 (MQ=255)                   ttCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCa                                                                                                      <  1:134996/138‑1 (MQ=255)                   ttCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGGTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCa                                                                                                      <  1:47586/138‑1 (MQ=255)                     cAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCAtt                                                                                                    <  5:243365/138‑1 (MQ=255)                      aaaTGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATtgt                                                                                                  <  8:322405/139‑1 (MQ=255)                       aaTGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGGATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATtgta                                                                                                 <  8:61248/139‑1 (MQ=255)                           tCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATtgtatgta                                                                                             <  3:241844/139‑1 (MQ=255)                           tCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATtgtatgta                                                                                             <  1:288016/139‑1 (MQ=255)                             aGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGTTTTAGCTTTAGGTATCGGGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCAGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTgtatgtat                                                                                            <  8:236796/138‑1 (MQ=255)                             aGCGCCGGTTGTGGCCAGGTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTgtatgtat                                                                                            <  8:977/138‑1 (MQ=255)                                 ccGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGtt                                                                                                                  <  6:329186/112‑1 (MQ=255)                                 ccGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGtt                                                                                                                  >  5:329186/1‑112 (MQ=255)                                    gTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTa                                                                                    >  3:99408/1‑139 (MQ=255)                                     ttGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgtt                                                                                   >  3:43750‑M2/1‑90 (MQ=255)                                               tttgtttCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcatag                                                                         <  7:201359‑M2/139‑60 (MQ=255)                                               tttgtttCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGtt                                                                         >  5:142282/1‑139 (MQ=255)                                                   tttCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTcc                                                                     <  3:127199/139‑1 (MQ=255)                                                             aTTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGtttt                                                           <  8:256784/139‑1 (MQ=255)                                                             aTTTAGCATTAGGTATCGAGGCTCGAACTGTTACGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTttatattgtaacgattccgctatttggacatcgaaatgtgccacctgttcatcgcatagttattgcttatat                                                            <  6:331821‑M2/138‑73 (MQ=255)                                                                       aGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAAc                                                  >  1:305159/1‑138 (MQ=255)                                                                        ggTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAg                                                                                                                    >  4:55849/1‑71 (MQ=255)                                                                        ggTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAg                                                                                                                    <  3:55849/71‑1 (MQ=255)                                                                        ggTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGa                                                >  4:303821/1‑139 (MQ=255)                                                                             cGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgctttttttcttgcggtcatt                                               >  8:279783‑M2/1‑50 (MQ=255)                                                                             cGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgctttttttcttgcggtcatt                                               <  7:279783‑M2/135‑86 (MQ=255)                                                                                      aaCTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        >  8:327642/1‑69 (MQ=255)                                                                                      aaCTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        >  3:240402/1‑69 (MQ=255)                                                                                      aaCTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  4:240402/69‑1 (MQ=255)                                                                                      aaCTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCt                                                                                                        <  7:327642/69‑1 (MQ=255)                                                                                      aaCTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCgg                                  <  4:99408/139‑1 (MQ=255)                                                                                       aCTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGa                                 <  6:142282/139‑1 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgctttttttcttgcggtcatt                                               <  8:212342‑M2/121‑86 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgctttttttcttgcggtcatt                                               >  7:212342‑M2/1‑36 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCt                                                                                                                         >  3:172112/1‑47 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCt                                                                                                                         <  4:172112/47‑1 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATg                                                                                                          <  5:86352/62‑1 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATg                                                                                                          >  6:86352/1‑62 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCt                             >  1:170390/1‑139 (MQ=255)                                                                                           ttCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGAGGAATCt                             >  3:305970/1‑139 (MQ=255)                                                                                                     aaaTGTATTTGTGGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgcttgttttcttgcggtcatttgtttcagcaccatttataaaccgccct                   <  1:129250‑M2/139‑114 (MQ=255)                                                                                                     aaaTGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTg                   >  2:269472/1‑139 (MQ=255)                                                                                                       aTGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGt                 <  1:269472/139‑1 (MQ=255)                                                                                                       aTGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGt                 <  7:152932/139‑1 (MQ=255)                                                                                                       aTGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGt                 <  3:303821/139‑1 (MQ=255)                                                                                                       aTGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGt                 <  5:265658/139‑1 (MQ=255)                                                                                                          tATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTTTGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCgg              >  6:118543/1‑139 (MQ=255)                                                                                                             ttGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGgtgt           >  7:104898/1‑139 (MQ=255)                                                                                                               gtgGTCGGTCTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgctttttttcttgcggtcatttgtttcagcaccattgataaaccgccctctttggaga          >  8:201359‑M2/1‑16 (MQ=255)                                                                                                               gtgGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATtgtatgta                                                                                             >  2:199489/1‑55 (MQ=255)                                                                                                               gtgGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATtgtatgta                                                                                             <  1:199489/55‑1 (MQ=255)                                                                                                                    cggtcTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCtttt                          <  3:2925/117‑1 (MQ=255)                                                                                                                    cggtcTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCtttt                          >  4:2925/1‑117 (MQ=255)                                                                                                                      gtcTGCCTTtttttttgtaacgattccgctatttggacatcgaaatgtgccagctgttcatcgcataggttttgctttttttcttgcggtcatttgtttcagcaccattgataaaccgccctctttggagatagatgag  >  6:158580‑M2/1‑9 (MQ=255)                                                                                                                      gtcTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGa                                                                  >  2:185244/1‑75 (MQ=255)                                                                                                                      gtcTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGa                                                                  <  1:185244/75‑1 (MQ=255)                                                                                                                      gtcTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAATg  <  2:37018/139‑1 (MQ=255)                                                                                                                      gtcTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAATg  <  7:330059/139‑1 (MQ=255)                                                                                                                      gtcTGACCTTCAAGATCGCTGTCAGTATCATTATGCTCTTTGTATGGATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAATg  <  8:287590/139‑1 (MQ=255)                                                                                                                              |                                                                                                                                   CAATGTTTATTATCGCTTTTCAAATGTCAGCGCCGGTTGTGGCCAGTTTGTTTCTAGTTGATTTAGCATTAGGTATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGTCGGTCTGCCTTTAAAGATCGCTGTCAGTTTCATTATGCTCATTGTATGTATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTAACGATTGAAACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAATG  >  CP006881/1669384‑1669639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.