mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 117 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 3 (0.010) | 3/262 | NT | 0.74% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 414 (1.250) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 4583137 | 353 (1.030) | 3 (0.010) | 3/266 | NT | 0.83% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 376 (1.140) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4542690 | 260 (0.760) | 11 (0.030) | 8/260 | NT | 3.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 311 (0.970) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 270 (0.790) | 12 (0.040) | 10/260 | NT | 4.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 311 (0.970) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4534139 | 373 (1.080) | 4 (0.010) | 3/258 | NT | 1.1% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 369 (1.160) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4530145 | 371 (1.080) | 4 (0.010) | 3/266 | NT | 1.1% | coding (99/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530173 | 369 (1.120) | coding (71/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| * | ? | NC_000913 | = 4528081 | 345 (1.000) | 7 (0.020) | 5/278 | NT | 1.9% | intergenic (+15/+30) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase |
| ? | NC_000913 | = 4528108 | 370 (1.080) | intergenic (+42/+3) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase | |||||
| * | ? | NC_000913 | 4522053 = | 346 (1.010) | 3 (0.010) | 3/256 | NT | 0.98% | intergenic (‑33/+74) | yjhF/yjhG | putative transporter/putative dehydratase |
| ? | NC_000913 | 4522097 = | 286 (0.900) | intergenic (‑77/+30) | yjhF/yjhG | putative transporter/putative dehydratase | |||||
| * | ? | NC_000913 | 4411257 = | 356 (1.040) | 4 (0.010) | 4/258 | NT | 1.3% | intergenic (+6/‑45) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein |
| ? | NC_000913 | 4411284 = | 300 (0.940) | intergenic (+33/‑18) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein | |||||
| * | ? | NC_000913 | 4396901 = | 385 (1.120) | 4 (0.010) | 3/266 | NT | 1.1% | coding (837/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | NC_000913 | 4396939 = | 371 (1.130) | coding (875/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||