New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2021654	100 (1.100)	6 (0.070)	5/258	NT	6.0%	coding (151/366 nt)	fliO	flagellar biosynthesis protein
	?	NC_000913	= 2021673	95 (1.120)					coding (170/366 nt)	fliO	flagellar biosynthesis protein

TAGTGATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2021499‑2021654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactggcgCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACCAGCCAGGCAGCAGCGAGGATCAGGGCAATAATGGCGATGAGTGCGCCGCTCACCTGCAGCAGTGGCGCAGCAGAAACCGGCGCGGAAGATT  <  NC_000913/2021673‑2021526                                                                                                                                                                                                                                                                                                                  TAGTGATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGC                                                                                                                                                             >  2:896972/1‑149    TGATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACT                                                                                                                                                          <  1:621163/149‑1    TGATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATGATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTCACCCGGTTGGGATTTGCCCCTAACCGCACg                                                                                                                                                          >  1:1517325/1‑148     GATGAATAACCACGCTACTGTGCAATCTTCGGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGAGGCGCACTCATCGCCATTATTTCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTG                                                                                                                                                         <  2:97915/149‑1      ATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGG                                                                                                                                                        >  2:334512/1‑149      ATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGG                                                                                                                                                        >  1:1223772/1‑149       gGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTAATGCCCTGATCCTCGCTGCGGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGC                                                                                                                                                       <  1:1556605/148‑1                                  CCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGT                                                                                                                            <  2:1510367/149‑1                                    GCGCCGGTGTCTGCTGCGCCACTGCTGCAGGTGACCGGCGCACTCATCGCCATTATTGCCCTGAGCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCACTAAACGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGC                                                                                                                          <  2:882620/149‑1                                           TTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGG                                                                                                                   <  2:947016/149‑1                                             TCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGGGG                                                                                                                 <  2:421105/149‑1                                             TCTGCTGCGCCACTGCGGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGCGCTAATTTTCAGACCGTAAACGCCAGTGCGTTTAGGGG                                                                                                                 <  1:612994/149‑1                                                                                 ATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAACCGGTTGGGATTTGCCCCTAAACGCACTGGCGCTAATTTTCAGACCGTAAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACCAGCCAGGCAGCAGCGA                                                                             <  2:41657/149‑1                                                                                                                                                       CTGGCGCTAATTTTCAGACCGGAAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACAAGCCAGGCAGCAGCGAGGATCAGGGCAATAATGGCGATGAGTGCGCCGCTCACCTGCAGCAGTGGCGCAGCAGAAACCGGCGCGGA       <  1:76764/149‑1                                                                                                                                                        TGGCGCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACCAGCCAGGCAGCAGCGAGGATCAGGGCAATAATGGCGATGAGTGCGCCGCTCACCTGTAGCAGTGGCGCAGCAGAAACCGGCGCGGAA      <  2:216940/149‑1                                                                                                                                                            GCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACCAGCCAGGCAGCAGCGAGGATCAGGGCAATAATGGCGATGAGTGCGCCGCTCACCTGCAGCAGTGGCGCAGCAGAAACCGGCGCGGAAGATT  >  1:422487/1‑149                                                                                                                                                            GCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACCAGCCAGGCAGCAGCGAGGATCAGGGCAATAATGGCGATGAGTGCGCCGCTCACCTGCAGCAGTGGCGCAGCAGAAACCGGCGCGGAAGATT  <  2:889062/149‑1                                                                                                                                                                                                                                                                                                                  TAGTGATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATCGCCATTATTGCCCTGATCCTCGCTGCTGCCTGGCTGGTAAAACGGTTGGGATTTGCCCCTAAACGCACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2021499‑2021654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactggcgCTAATTTTCAGACCGTTAACGCCAGTGCGTTTAGGGGCAAATCCCAACCGTTTTACCAGCCAGGCAGCAGCGAGGATCAGGGCAATAATGGCGATGAGTGCGCCGCTCACCTGCAGCAGTGGCGCAGCAGAAACCGGCGCGGAAGATT  <  NC_000913/2021673‑2021526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.