mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4515380 | 286 (1.130) | 4 (0.020) | 4/262 | NT | 1.4% | coding (1298/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| ? | NC_000913 | = 4515421 | 285 (1.200) | coding (1257/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein | |||||
| * | ? | NC_000913 | = 4511982 | 240 (0.950) | 4 (0.020) | 4/270 | NT | 1.6% | coding (433/957 nt) | fecD | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512021 | 248 (1.010) | coding (394/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | = 4502153 | 236 (0.930) | 3 (0.010) | 3/264 | NT | 1.3% | noncoding (1363/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | = 4502173 | 238 (0.990) | noncoding (1343/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 4474083 = | 269 (1.060) | 5 (0.020) | 3/256 | NT | 2.0% | intergenic (‑30/‑41) | bdcA/bdcR | c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA |
| ? | NC_000913 | 4474127 = | 231 (0.990) | coding (4/594 nt) | bdcR | transcriptional repressor for divergent bdcA | |||||
| * | ? | NC_000913 | = 4362565 | 229 (0.900) | 3 (0.010) | 3/272 | NT | 1.3% | noncoding (62/76 nt) | pheU | tRNA‑Phe |
| ? | NC_000913 | 4362572 = | 218 (0.880) | noncoding (55/76 nt) | pheU | tRNA‑Phe | |||||
| * | ? | NC_000913 | = 4189604 | 264 (1.040) | 4 (0.020) | 4/258 | NT | 1.5% | intergenic (+31/‑182) | rpoC/yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein |
| ? | NC_000913 | = 4189608 | 266 (1.130) | intergenic (+35/‑178) | rpoC/yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein | |||||
| * | ? | NC_000913 | = 4101490 | 218 (0.860) | 6 (0.020) | 5/268 | NT | 2.7% | intergenic (+60/‑200) | sodA/kdgT | superoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter |
| ? | NC_000913 | = 4101503 | 225 (0.920) | intergenic (+73/‑187) | sodA/kdgT | superoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter | |||||
| * | ? | NC_000913 | = 4094350 | 293 (1.160) | 4 (0.020) | 4/196 | NT | 1.8% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 242 (1.360) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 3998038 = | 205 (0.810) | 3 (0.010) | 3/264 | NT | 1.6% | coding (56/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | 3998077 = | 181 (0.750) | coding (95/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||
| * | ? | NC_000913 | = 3998036 | 206 (0.810) | 5 (0.020) | 3/274 | NT | 2.5% | coding (54/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | = 3998077 | 188 (0.750) | coding (95/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||