| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3246883 | 32 (0.540) | 3 (0.050) | 3/262 | NT | 8.8% | coding (232/777 nt) | exuR | hexuronate regulon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 3246894 | 32 (0.570) | coding (243/777 nt) | exuR | hexuronate regulon transcriptional repressor; autorepressor | |||||
ATAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCA > NC_000913/3246740‑3247030 | aTAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCAt < 2:953881/149‑1 (MQ=255) aaCTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATcag < 1:421622/149‑1 (MQ=255) ccTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGAAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCTAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGgc < 2:36598‑M2/149‑3 (MQ=255) cTGCAGCACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGgcg < 1:476623‑M2/149‑4 (MQ=255) cAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGgcggct > 1:546062‑M2/1‑143 (MQ=255) cAGAACGCATTATTGCCGATGAAAAGAACGTCAGACGTACGTTAGTTCTTTAATAAATATTCATTCTGTAATTTGAAGTCTATGTCTAATTTCGTAAATGTTCAGTTATTCATGTTGTTTCAAAACAGCCGCGCCATCAGAAGGCGGCt < 2:720827/149‑1 (MQ=255) aCGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCCTCATCATGCTGGAAGTTGAAGGCTATGTCGCAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCctgctgatggcgcggctggtt < 1:626293‑M1/149‑22 (MQ=255) gCCGATGAAAAGACCGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGa > 2:815655/1‑149 (MQ=255) gcaaaGAAGGTCAGCCGTACGGTAGTTCGTGAAGCCAACATCATGCTGGAAGTTGACGGCTATGTCGAAGTGCGTAAAGGGTCAGGTTTTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGc < 1:187025/147‑1 (MQ=255) aaaGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGGAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCa > 2:236670/1‑149 (MQ=255) aaaGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCCTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCa > 1:372775/1‑149 (MQ=255) cGTCAGCCGTACGGTAGATCGTGAAGCAATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACg < 1:756708/149‑1 (MQ=255) cAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCctgctgatggcgcggctggttggaaa < 1:1005917‑M1/127‑27 (MQ=255) cAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCctgctgatggcgcggctggttggaaa > 2:1005917‑M1/1‑101 (MQ=255) cAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTc < 2:349713/149‑1 (MQ=255) cAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTc < 2:209861/149‑1 (MQ=255) aGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTcc > 1:746153/1‑149 (MQ=255) cGGTAGTTCGTGAATCCATCATCATTCTGGAAGTTGAAGTCTATGTCGAAGTGCGTAAAGGTTCAGGTTTTCATTTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATTGAATTCGCCAATTACGGTCCGTTTGAg < 2:888180/149‑1 (MQ=255) gCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCg > 1:556064/1‑149 (MQ=255) catcatcatGCTGGAAGTTGATGGCTATGACAAAGTGCGTAAAGGTACAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCTGCTGAAAATAATATGCAATTCGCCAATTACGAACCGATTGAGTAGCATCAGGCTCGcc > 1:702097/1‑149 (MQ=255) ctcatGCTGGAAGTTGAAGGCTAGGTCGAAGTGCGTAAAGGTACTGGTTTGCATGTGTTTTCCAACCAGCCGCGCCCTCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCCGCt < 2:220410/148‑1 (MQ=255) ggAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGaaa < 1:464413/149‑1 (MQ=255) aGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTa > 1:358600/1‑149 (MQ=255) gAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAatat > 2:432077/1‑149 (MQ=255) ggCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGc > 2:655350/1‑149 (MQ=255) gCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGcc > 2:163249/1‑149 (MQ=255) cTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAatatgtccg > 2:675144/1‑144 (MQ=255) gAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTcgc > 1:307374/1‑149 (MQ=255) aGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCGAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCGCATCGAAAGTAATATTGCCGAATTCGCgg < 2:755384/149‑1 (MQ=255) cGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGCGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAAc > 2:713921/1‑149 (MQ=255) aaGGTTCAGGTCTTCATGTGGTTTCCAACCAGCCGGGCCATCAGCAGGCGGCTGTCTATAATATGGAATTCGCCAATTTCGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATAGAAAGTAATATTGCCGAATTCGCGGCAACTCAg < 1:1004007/149‑1 (MQ=255) aaGGTGCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAg < 1:862586/149‑1 (MQ=255) aTTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAAATACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTTCCTAATTCGCGGCAACTAAGGTAACGAAAcc > 2:766433/1‑148 (MQ=255) atttgGTTTCCAAACAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCGCGCCAGCTCATCGAAAGTAATTTTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAc < 1:939680/146‑1 (MQ=255) aTGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAc < 2:698869/149‑1 (MQ=255) aTGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAc > 2:281538/1‑149 (MQ=255) tgGTTTCCAACCAGACGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCTCCAATTACGGGCCGTTTGATTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAcatc < 1:577840/149‑1 (MQ=255) tttCCAACCAGCCGCGCCATCAGCAGgcggctggttggaaaccacatgaatacctgaacctttacgcacttcgacatagccttcaacttccagcatgatgatggcttcacgaactaccgtacggctg > 2:1005917‑M2/1‑26 (MQ=255) tttCCAACCAGCCGCGCCATCAGCAGgcggctggttggaaaccacatgaatacctgaacctttacgcacttcgacatagccttcaacttccagcatgatgatggcttcacgaactaccgtacggctg < 1:1005917‑M2/127‑102 (MQ=255) ttCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAAAAATATGGAATTCGCCAATTACGGTCCGATTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGa < 1:36598/149‑1 (MQ=255) aaCCAGCCGCGCCATCAGCAGgcggctggttggaaaccacatgaatacctgaacctttacgcactgcgacatagccttcaacttccagcatgatgagggcttcacgaactaccgtacggctgacgttcttttcatcggcaataaagcgt < 1:626293‑M2/149‑129 (MQ=255) aaCCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGGTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAAcg > 1:912275/1‑148 (MQ=255) aGCCGCctgctgatggcgcggctggttggaaaccacatgaatacctgaacctttacgcacttcgacatagccttcaacttccagcatgatgatggcttcacgaactaccgtacggctgacgttcttttcatcggcaataaagcgttctg > 1:546062‑M1/1‑6 (MQ=255) gCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCATCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATACGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATgg < 2:869282/149‑1 (MQ=255) cgcgCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGcc > 2:215346/1‑149 (MQ=255) cgcctgctgatggcgcggctggttggaaaccacatgaatacctgaacctttacgcacttcgacatagccttcaacttccagcatgatgatggcttcacgaactaccgtacggctgacgttcttttcatcggcaataaagcgtgctgcag < 1:476623‑M1/149‑147 (MQ=255) gcctgctgatggcgcggctggttggaaaccacatgaatacctgaacctttacgcacttagacatagccttcaacttccagcatgatgatggcttcacgaacttccgtacggctgacgttcttttcatcggcaataaagcgttctgcagg < 2:36598‑M1/149‑148 (MQ=255) | ATAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCA > NC_000913/3246740‑3247030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |