New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3246883	32 (0.540)	3 (0.050)	3/262	NT	8.8%	coding (232/777 nt)	exuR	hexuronate regulon transcriptional repressor; autorepressor
	?	NC_000913	= 3246894	32 (0.570)					coding (243/777 nt)	exuR	hexuronate regulon transcriptional repressor; autorepressor

CCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCATTCAGGAA  >  NC_000913/3246748‑3247038                                                                                                                                                   |                                                                                                                                                 ccTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGAAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCTAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGgc                                                                                                                                                <  2:36598‑M2/149‑3 (MQ=255)  cTGCAGCACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGgcg                                                                                                                                               <  1:476623‑M2/149‑4 (MQ=255)     cAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGgcggct                                                                                                                                            >  1:546062‑M2/1‑143 (MQ=255)     cAGAACGCATTATTGCCGATGAAAAGAACGTCAGACGTACGTTAGTTCTTTAATAAATATTCATTCTGTAATTTGAAGTCTATGTCTAATTTCGTAAATGTTCAGTTATTCATGTTGTTTCAAAACAGCCGCGCCATCAGAAGGCGGCt                                                                                                                                            <  2:720827/149‑1 (MQ=255)                   gCCGATGAAAAGACCGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGa                                                                                                                              >  2:815655/1‑149 (MQ=255)                         gcaaaGAAGGTCAGCCGTACGGTAGTTCGTGAAGCCAACATCATGCTGGAAGTTGACGGCTATGTCGAAGTGCGTAAAGGGTCAGGTTTTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGc                                                                                                                        <  1:187025/147‑1 (MQ=255)                           aaaGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGGAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCa                                                                                                                      >  2:236670/1‑149 (MQ=255)                           aaaGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCCTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCa                                                                                                                      >  1:372775/1‑149 (MQ=255)                                 cGTCAGCCGTACGGTAGATCGTGAAGCAATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACg                                                                                                                <  1:756708/149‑1 (MQ=255)                                    cAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTc                                                                                                             <  2:349713/149‑1 (MQ=255)                                    cAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTc                                                                                                             <  2:209861/149‑1 (MQ=255)                                     aGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTcc                                                                                                            >  1:746153/1‑149 (MQ=255)                                            cGGTAGTTCGTGAATCCATCATCATTCTGGAAGTTGAAGTCTATGTCGAAGTGCGTAAAGGTTCAGGTTTTCATTTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATTGAATTCGCCAATTACGGTCCGTTTGAg                                                                                                     <  2:888180/149‑1 (MQ=255)                                                          gCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCg                                                                                       >  1:556064/1‑149 (MQ=255)                                                            catcatcatGCTGGAAGTTGATGGCTATGACAAAGTGCGTAAAGGTACAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCTGCTGAAAATAATATGCAATTCGCCAATTACGAACCGATTGAGTAGCATCAGGCTCGcc                                                                                     >  1:702097/1‑149 (MQ=255)                                                                ctcatGCTGGAAGTTGAAGGCTAGGTCGAAGTGCGTAAAGGTACTGGTTTGCATGTGTTTTCCAACCAGCCGCGCCCTCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCCGCt                                                                                 <  2:220410/148‑1 (MQ=255)                                                                        ggAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGaaa                                                                         <  1:464413/149‑1 (MQ=255)                                                                           aGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTa                                                                      >  1:358600/1‑149 (MQ=255)                                                                               gAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAatat                                                                  >  2:432077/1‑149 (MQ=255)                                                                                  ggCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGc                                                               >  2:655350/1‑149 (MQ=255)                                                                                   gCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGcc                                                              >  2:163249/1‑149 (MQ=255)                                                                                    cTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAatatgtccg                                                             >  2:675144/1‑144 (MQ=255)                                                                                           gAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTcgc                                                      >  1:307374/1‑149 (MQ=255)                                                                                             aGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCGAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCGCATCGAAAGTAATATTGCCGAATTCGCgg                                                    <  2:755384/149‑1 (MQ=255)                                                                                                 cGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGCGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAAc                                                >  2:713921/1‑149 (MQ=255)                                                                                                     aaGGTTCAGGTCTTCATGTGGTTTCCAACCAGCCGGGCCATCAGCAGGCGGCTGTCTATAATATGGAATTCGCCAATTTCGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATAGAAAGTAATATTGCCGAATTCGCGGCAACTCAg                                            <  1:1004007/149‑1 (MQ=255)                                                                                                     aaGGTGCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAg                                            <  1:862586/149‑1 (MQ=255)                                                                                                                aTTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAAATACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTTCCTAATTCGCGGCAACTAAGGTAACGAAAcc                                 >  2:766433/1‑148 (MQ=255)                                                                                                                    atttgGTTTCCAAACAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCGCGCCAGCTCATCGAAAGTAATTTTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAc                             <  1:939680/146‑1 (MQ=255)                                                                                                                    aTGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAc                             >  2:281538/1‑149 (MQ=255)                                                                                                                    aTGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAc                             <  2:698869/149‑1 (MQ=255)                                                                                                                       tgGTTTCCAACCAGACGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCTCCAATTACGGGCCGTTTGATTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGAcatc                          <  1:577840/149‑1 (MQ=255)                                                                                                                          tttCCAACCAGCCGCGCCATCAGCAGgcggctggttggaaaccacatgaatacctgaacctttacgcacttcgacatagccttcaacttccagcatgatgatggcttcacgaactaccgtacggctg                                             >  2:1005917‑M2/1‑26 (MQ=255)                                                                                                                          tttCCAACCAGCCGCGCCATCAGCAGgcggctggttggaaaccacatgaatacctgaacctttacgcacttcgacatagccttcaacttccagcatgatgatggcttcacgaactaccgtacggctg                                             <  1:1005917‑M2/127‑102 (MQ=255)                                                                                                                           ttCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAAAAATATGGAATTCGCCAATTACGGTCCGATTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGa                      <  1:36598/149‑1 (MQ=255)                                                                                                                               aaCCAGCCGCGCCATCAGCAGgcggctggttggaaaccacatgaatacctgaacctttacgcactgcgacatagccttcaacttccagcatgatgagggcttcacgaactaccgtacggctgacgttcttttcatcggcaataaagcgt                  <  1:626293‑M2/149‑129 (MQ=255)                                                                                                                               aaCCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGGTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAAcg                  >  1:912275/1‑148 (MQ=255)                                                                                                                                    gCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCATCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATACGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATgg             <  2:869282/149‑1 (MQ=255)                                                                                                                                      cgcgCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGcc           >  2:215346/1‑149 (MQ=255)                                                                                                                                               agcagGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCATTCAGGaa  <  1:215346/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCATTCAGGAA  >  NC_000913/3246748‑3247038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.