| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3880427 = | 166 (2.420) | 3 (0.050) | 3/266 | NT | 1.9% | coding (795/1074 nt) | recF | gap repair protein |
| ? | NC_000913 | 3880485 = | 149 (2.260) | coding (737/1074 nt) | recF | gap repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3880579‑3880427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCG > NC_000913/3880485‑3880631 TCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCACCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCC > 2:467142/1‑149 CTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCG > 1:534345/1‑149 TCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGCCTTACGCATTCGCGCCGACGGTGCGCCGG > 2:1147600/1‑149 TCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGG < 2:581069/149‑1 TCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACAGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGG > 2:309670/1‑149 CTGACTTTCTCTTTCCCGCGCGGCGGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGT < 2:380202/149‑1 CTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGCGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGT < 2:483730/149‑1 CCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGA > 1:762192/1‑149 CGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAG > 2:226339/1‑149 GCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGA < 2:762192/149‑1 GTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACC > 2:884394/1‑149 TGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCG > 1:386083/1‑149 TGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCG < 2:188476/149‑1 TCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3880579‑3880427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCG > NC_000913/3880485‑3880631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |