mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4306827 = | 72 (1.210) | 3 (0.060) | 3/254 | NT | 4.6% | intergenic (‑230/+43) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase |
| ? | NC_000913 | 4306864 = | 57 (1.050) | intergenic (‑267/+6) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase | |||||
| * | ? | NC_000913 | = 3938714 | 79 (1.330) | 3 (0.050) | 3/262 | NT | 3.8% | coding (488/993 nt) | rbsR | transcriptional repressor of ribose metabolism |
| ? | NC_000913 | = 3938726 | 78 (1.390) | coding (500/993 nt) | rbsR | transcriptional repressor of ribose metabolism | |||||
| * | ? | NC_000913 | 3873741 = | 111 (1.870) | 3 (0.050) | 3/262 | NT | 2.9% | coding (734/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase |
| ? | NC_000913 | 3873793 = | 96 (1.710) | coding (682/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase | |||||
| * | ? | NC_000913 | = 3857685 | 79 (1.330) | 3 (0.050) | 3/260 | NT | 3.7% | coding (720/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3857715 | 83 (1.490) | coding (690/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | 3854880 = | 94 (1.590) | 4 (0.070) | 4/258 | NT | 4.5% | coding (959/1185 nt) | emrD | multidrug efflux system protein |
| ? | NC_000913 | 3854940 = | 81 (1.460) | coding (1019/1185 nt) | emrD | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 3795026 | 121 (2.040) | 5 (0.090) | 4/260 | NT | 4.0% | coding (98/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_000913 | = 3795059 | 129 (2.310) | coding (131/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_000913 | 2866283 = | 60 (1.010) | 3 (0.050) | 3/262 | NT | 4.9% | coding (1183/1365 nt) | ygbN | putative transporter |
| ? | NC_000913 | 2866323 = | 59 (1.050) | coding (1223/1365 nt) | ygbN | putative transporter | |||||
| * | ? | NC_000913 | = 2857223 | 65 (1.100) | 3 (0.050) | 3/264 | NT | 4.6% | coding (131/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| ? | NC_000913 | = 2857230 | 62 (1.090) | coding (138/2562 nt) | mutS | methyl‑directed mismatch repair protein | |||||
| * | ? | NC_000913 | = 2191628 | 61 (1.030) | 3 (0.050) | 3/264 | NT | 4.8% | coding (18/720 nt) | yehC | putative periplasmic pilin chaperone |
| ? | NC_000913 | = 2191637 | 60 (1.060) | coding (9/720 nt) | yehC | putative periplasmic pilin chaperone | |||||
| * | ? | NC_000913 | = 1992695 | 68 (1.150) | 3 (0.050) | 3/260 | NT | 4.3% | coding (123/549 nt) | pgsA | phosphatidylglycerophosphate synthetase |
| ? | NC_000913 | = 1992709 | 69 (1.240) | coding (109/549 nt) | pgsA | phosphatidylglycerophosphate synthetase | |||||