mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 144 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4636330 | 413 (1.170) | 5 (0.010) | 3/264 | NT | 1.2% | coding (324/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | = 4636367 | 414 (1.230) | coding (361/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | = 4633254 | NA (NA) | 5 (0.010) | 4/268 | NT | 1.4% | coding (492/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | = 4633303 | 361 (1.060) | coding (443/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | = 4633095 | 369 (1.040) | 6 (0.020) | 3/262 | NT | 1.7% | noncoding (5/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633163 | 356 (1.070) | noncoding (73/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4621634 = | 357 (1.010) | 4 (0.010) | 4/258 | NT | 1.2% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 312 (0.950) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 4583130 | 277 (0.780) | 13 (0.040) | 10/272 | NT | 4.2% | intergenic (‑82/+119) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583231 | 327 (0.940) | intergenic (‑183/+18) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4549766 | 443 (1.250) | 6 (0.020) | 3/272 | NT | 1.4% | intergenic (+56/+187) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | NC_000913 | = 4549839 | NA (NA) | intergenic (+129/+114) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | = 4534139 | 367 (1.040) | 7 (0.020) | 7/258 | NT | 1.9% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 383 (1.160) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4523090 | 407 (1.150) | 5 (0.010) | 4/264 | NT | 1.3% | coding (1005/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | = 4523100 | 394 (1.170) | coding (995/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 4503054 = | 465 (1.310) | 4 (0.010) | 3/266 | NT | 0.90% | noncoding (462/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4503076 = | 436 (1.290) | noncoding (440/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 4497952 | 400 (1.130) | 4 (0.010) | 3/260 | NT | 1.0% | intergenic (+12/‑320) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | = 4497954 | 391 (1.180) | intergenic (+14/‑318) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||