mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 190 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4639371 = | 528 (1.080) | 3 (0.010) | 3/268 | NT | 0.62% | coding (1194/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | 4639427 = | 456 (0.970) | coding (1250/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | 4584195 = | 599 (1.230) | 4 (0.010) | 4/264 | NT | 0.73% | coding (2567/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| ? | NC_000913 | 4584232 = | 512 (1.110) | coding (2530/3513 nt) | hsdR | endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4583170 | 460 (0.940) | 6 (0.010) | 4/266 | NT | 1.3% | intergenic (‑122/+79) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583190 | 470 (1.010) | intergenic (‑142/+59) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4583124 | 393 (0.810) | 10 (0.020) | 6/264 | NT | 2.2% | intergenic (‑76/+125) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583237 | 519 (1.120) | intergenic (‑189/+12) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4578923 = | 437 (0.900) | 5 (0.010) | 3/266 | NT | 1.2% | coding (415/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB |
| ? | NC_000913 | 4579019 = | 377 (0.810) | coding (319/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB | |||||
| * | ? | NC_000913 | 4519771 = | 577 (1.180) | 3 (0.010) | 3/272 | NT | 0.54% | coding (554/987 nt) | yjhU | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| ? | NC_000913 | 4519797 = | 537 (1.120) | coding (528/987 nt) | yjhU | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element | |||||
| * | ? | NC_000913 | = 4502104 | 471 (0.960) | 10 (0.020) | 6/256 | NT | 2.1% | noncoding (1412/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | = 4502108 | 477 (1.060) | noncoding (1408/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 4486252 = | 439 (0.900) | 3 (0.010) | 3/262 | NT | 0.77% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 356 (0.770) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | = 4481997 | 550 (1.130) | 4 (0.010) | 3/264 | NT | 0.74% | coding (1841/2856 nt) | valS | valyl‑tRNA synthetase |
| ? | NC_000913 | = 4482045 | 552 (1.190) | coding (1793/2856 nt) | valS | valyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 4459372 | 430 (0.880) | 4 (0.010) | 4/266 | NT | 0.99% | intergenic (+61/‑118) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459452 | 392 (0.840) | intergenic (+141/‑38) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||