mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633254 | NA (NA) | 4 (0.020) | 3/268 | NT | 1.3% | coding (492/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | = 4633303 | 293 (1.220) | coding (443/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | = 4531428 | 250 (1.000) | 4 (0.020) | 4/260 | NT | 1.6% | coding (224/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | = 4531451 | 255 (1.100) | coding (201/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | NC_000913 | = 4497499 | 309 (1.240) | 5 (0.020) | 3/266 | NT | 1.7% | pseudogene (825/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | = 4497525 | 290 (1.220) | pseudogene (851/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | = 4459372 | 226 (0.910) | 8 (0.030) | 4/266 | NT | 3.8% | intergenic (+61/‑118) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459452 | 187 (0.790) | intergenic (+141/‑38) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
| * | ? | NC_000913 | = 4295918 | 166 (0.670) | 3 (0.010) | 3/264 | NT | 2.8% | noncoding (84/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4296160 | 53 (0.220) | noncoding (326/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4189437 | 254 (1.020) | 12 (0.050) | 10/278 | NT | 4.5% | coding (4088/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | 4189443 = | 251 (1.010) | coding (4094/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| * | ? | NC_000913 | 4138253 = | 270 (1.080) | 9 (0.040) | 3/270 | NT | 3.4% | coding (783/1104 nt) | gldA | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| ? | NC_000913 | 4138292 = | 249 (1.030) | coding (744/1104 nt) | gldA | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | NC_000913 | = 4094350 | 286 (1.150) | 8 (0.050) | 7/196 | NT | 3.5% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 238 (1.360) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 4020306 = | 299 (1.200) | 4 (0.020) | 3/270 | NT | 1.4% | coding (81/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase |
| ? | NC_000913 | 4020348 = | 289 (1.200) | coding (123/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase | |||||
| * | ? | NC_000913 | 3979290 = | 276 (1.110) | 5 (0.020) | 3/262 | NT | 1.9% | coding (690/1353 nt) | wzyE | putative ECA polysaccharide chain elongation protein |
| ? | NC_000913 | = 3979286 | 262 (1.120) | coding (686/1353 nt) | wzyE | putative ECA polysaccharide chain elongation protein | |||||