mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 153 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 5 (0.050) | 3/262 | NT | 4.2% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 116 (1.070) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4623584 = | 100 (0.890) | 3 (0.030) | 3/266 | NT | 3.0% | coding (534/1017 nt) | lplA | lipoate‑protein ligase A |
| ? | NC_000913 | 4623653 = | 100 (0.930) | coding (465/1017 nt) | lplA | lipoate‑protein ligase A | |||||
| * | ? | NC_000913 | 4585312 = | 121 (1.080) | 4 (0.040) | 4/264 | NT | 3.4% | coding (1450/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| ? | NC_000913 | 4585357 = | 112 (1.050) | coding (1405/3513 nt) | hsdR | endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4558313 | 123 (1.100) | 4 (0.040) | 4/254 | NT | 3.3% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | = 4558336 | 119 (1.160) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | 4532853 = | 116 (1.030) | 4 (0.040) | 3/272 | NT | 3.1% | coding (331/747 nt) | yjhP | putative methyltransferase |
| ? | NC_000913 | 4532906 = | 133 (1.210) | coding (278/747 nt) | yjhP | putative methyltransferase | |||||
| * | ? | NC_000913 | 4499717 = | 106 (0.950) | 3 (0.030) | 3/262 | NT | 3.0% | pseudogene (818/942 nt) | yjgX | pseudogene fragment |
| ? | NC_000913 | 4499750 = | 91 (0.860) | pseudogene (785/942 nt) | yjgX | pseudogene fragment | |||||
| * | ? | NC_000913 | = 4477750 | 115 (1.030) | 4 (0.040) | 3/268 | NT | 3.6% | coding (562/1005 nt) | argI | ornithine carbamoyltransferase 1 |
| ? | NC_000913 | = 4477776 | 104 (0.960) | coding (536/1005 nt) | argI | ornithine carbamoyltransferase 1 | |||||
| * | ? | NC_000913 | 4474083 = | 120 (1.070) | 3 (0.030) | 3/256 | NT | 2.9% | intergenic (‑30/‑41) | bdcA/bdcR | c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA |
| ? | NC_000913 | 4474127 = | 91 (0.880) | coding (4/594 nt) | bdcR | transcriptional repressor for divergent bdcA | |||||
| * | ? | NC_000913 | 4457562 = | 99 (0.880) | 3 (0.030) | 3/264 | NT | 3.1% | coding (304/552 nt) | yjgA | ribosome‑associated UPF0307 family protein |
| ? | NC_000913 | 4457597 = | 92 (0.860) | coding (269/552 nt) | yjgA | ribosome‑associated UPF0307 family protein | |||||
| * | ? | NC_000913 | = 4443459 | 96 (0.860) | 3 (0.030) | 3/262 | NT | 3.2% | coding (1078/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | NC_000913 | = 4443482 | 91 (0.860) | coding (1101/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||