mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 32,907 | T→C | 6.4% | A697A (GCT→GCC) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 32,911 | G→T | 6.4% | E699* (GAA→TAA) ‡ | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 32,912 | A→C | 6.4% | E699A (GAA→GCA) ‡ | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 32,916 | G→A | 6.2% | M700I (ATG→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 78,830 | T→A | 6.7% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 6.3% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 124,866 | A→C | 5.0% | D617A (GAC→GCC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 126,393 | C→A | 5.0% | A233A (GCC→GCA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,405 | A→G | 6.6% | S237S (TCA→TCG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 129,798 | A→T | 9.4% | I488N (ATC→AAC) | yacH ← | DUF3300 family protein |
| RA | 134,173 | C→T | 5.4% | T853T (ACC→ACT) | acnB → | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase |
| RA | 167,291 | G→A | 5.2% | intergenic (+27/‑193) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,293 | G→C | 5.2% | intergenic (+29/‑191) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,295 | T→C | 5.2% | intergenic (+31/‑189) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,917 | A→C | 5.2% | Q145P (CAG→CCG) ‡ | fhuA → | ferrichrome outer membrane transporter |
| RA | 167,918 | G→C | 5.6% | Q145H (CAG→CAC) ‡ | fhuA → | ferrichrome outer membrane transporter |
| RA | 167,919 | G→T | 6.6% | G146C (GGC→TGC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 184,240 | G→T | 10.2% | intergenic (‑145/+17) | yaeH ← / ← yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| RA | 240,840 | T→G | 5.3% | intergenic (+24/+19) | ivy → / ← fadE | inhibitor of c‑type lysozyme, periplasmic/acyl coenzyme A dehydrogenase |
| RA | 254,228 | A→T | 6.1% | intergenic (+26/+31) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,233 | A→T | 5.4% | intergenic (+31/+26) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,238 | A→T | 5.8% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 265,573 | G→A | 7.6% | intergenic (‑30/+47) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,578 | C→T | 7.4% | intergenic (‑35/+42) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,579 | T→A | 7.2% | intergenic (‑36/+41) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,582 | T→A | 7.6% | intergenic (‑39/+38) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,583 | A→G | 7.3% | intergenic (‑40/+37) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,588 | T→C | 7.5% | intergenic (‑45/+32) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 394,153 | C→A | 10.0% | pseudogene (1184/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 404,113 | A→C | 6.4% | A137A (GCA→GCC) | yaiC → | diguanylate cyclase, cellulose regualtor |
| RA | 404,115 | G→C | 5.4% | G138A (GGC→GCC) | yaiC → | diguanylate cyclase, cellulose regualtor |
| RA | 440,662 | C→A | 5.3% | S147I (AGC→ATC) ‡ | ispA ← | geranyltranstransferase |
| RA | 440,663 | T→G | 5.4% | S147R (AGC→CGC) ‡ | ispA ← | geranyltranstransferase |
| RA | 458,744 | T→A | 5.1% | intergenic (+44/‑144) | clpX → / → lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| RA | 495,026 | A→T | 5.2% | intergenic (+16/‑94) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 495,028 | C→A | 5.6% | intergenic (+18/‑92) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 495,029 | A→T | 5.1% | intergenic (+19/‑91) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 551,368 | T→G | 5.9% | intergenic (+36/+159) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 585,863 | T→C | 6.1% | intergenic (‑230/‑194) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| RA | 585,866 | G→A | 6.1% | intergenic (‑233/‑191) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| RA | 603,391 | C→G | 5.6% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 5.9% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 5.5% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 613,549 | T→G | 5.6% | R271R (CGT→CGG) | fes → | enterobactin/ferrienterobactin esterase |
| RA | 641,360 | C→T | 5.2% | intergenic (+42/+79) | ahpF → / ← uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| RA | 645,069 | G→A | 6.4% | intergenic (‑66/+48) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,070 | G→A | 6.4% | intergenic (‑67/+47) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,073 | T→C | 6.5% | intergenic (‑70/+44) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,074 | T→C | 6.5% | intergenic (‑71/+43) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 699,432 | G→A | 6.4% | intergenic (‑255/+142) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,433 | C→A | 5.8% | intergenic (‑256/+141) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,439 | G→T | 6.5% | intergenic (‑262/+135) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,440 | A→C | 5.9% | intergenic (‑263/+134) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,446 | T→G | 5.7% | intergenic (‑269/+128) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,447 | T→C | 5.7% | intergenic (‑270/+127) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 729,376 | G→T | 8.1% | intergenic (+36/‑207) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 729,377 | A→T | 6.3% | intergenic (+37/‑206) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 729,378 | A→T | 6.7% | intergenic (+38/‑205) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 729,379 | A→C | 7.5% | intergenic (+39/‑204) | ybfA → / → rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 756,331 | G→T | 15.1% | G142V (GGT→GTT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 756,886 | T→G | 87.0% | L327R (CTG→CGG) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 774,635 | T→G | 5.1% | intergenic (+33/‑117) | ybgE → / → ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| RA | 857,576 | T→C | 7.6% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 6.7% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 6.8% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 875,395 | G→T | 9.6% | A21S (GCA→TCA) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 900,202 | T→A | 6.6% | K125I (AAA→ATA) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,205 | A→T | 6.2% | L124Q (CTG→CAG) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,208 | T→A | 5.1% | D123V (GAT→GTT) ‡ | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,209 | C→A | 6.0% | D123Y (GAT→TAT) ‡ | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 922,314:1 | +C | 5.3% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 928,452 | T→A | 5.0% | Q248H (CAA→CAT) | cydC ← | glutathione/cysteine ABC transporter export permease/ATPase |
| RA | 968,412 | T→A | 5.4% | L16* (TTG→TAG) | lpxK → | lipid A 4'kinase |
| RA | 987,560 | G→C | 10.2% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 12.2% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,074,894 | G→T | 5.2% | intergenic (+14/+26) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,898 | G→A | 5.0% | intergenic (+18/+22) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,899 | T→C | 5.1% | intergenic (+19/+21) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,903 | A→C | 5.6% | intergenic (+23/+17) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,139,787 | C→G | 5.1% | D470E (GAC→GAG) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,139,796 | C→G | 5.8% | A473A (GCC→GCG) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,141,656 | T→A | 5.2% | E904D (GAA→GAT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,157,632 | A→T | 6.0% | intergenic (+58/‑237) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,192,685 | A→C | 5.1% | R363R (CGT→CGG) | mnmA ← | tRNA(Gln,Lys,Glu) U34 2‑thiouridylase |
| RA | 1,224,239 | A→T | 5.0% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 5.0% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,235,686 | A→G | 7.7% | intergenic (+29/+23) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,687 | A→T | 8.4% | intergenic (+30/+22) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,688 | A→T | 8.3% | intergenic (+31/+21) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,689 | C→T | 7.4% | intergenic (+32/+20) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,286,885 | T→C | 13.8% | intergenic (+359/+181) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,965 | A→G | 18.0% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,974 | C→T | 18.9% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,311,830 | A→G | 5.7% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 5.5% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,349,053 | A→T | 7.0% | I352N (ATT→AAT) | yciW ← | putative oxidoreductase |
| RA | 1,356,057 | T→G | 5.9% | N352H (AAC→CAC) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| RA | 1,406,093 | A→G | 6.7% | I39V (ATC→GTC) | smrA → | DNA endonuclease |
| RA | 1,406,098 | C→T | 6.6% | D40D (GAC→GAT) | smrA → | DNA endonuclease |
| RA | 1,410,986 | A→G | 6.2% | intergenic (+102/+27) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,990 | T→A | 5.7% | intergenic (+106/+23) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,991 | T→A | 5.6% | intergenic (+107/+22) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,995 | C→T | 5.8% | intergenic (+111/+18) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,449,799 | C→G | 8.5% | T517T (ACG→ACC) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,802 | A→G | 8.9% | A516A (GCT→GCC) ‡ | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,803 | G→C | 9.2% | A516G (GCT→GGT) ‡ | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,804 | C→T | 9.0% | A516T (GCT→ACT) ‡ | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,807 | C→G | 9.4% | G515R (GGT→CGT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,457,979 | A→T | 6.9% | E161D (GAA→GAT) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,981 | G→C | 5.2% | S162T (AGT→ACT) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,986 | A→T | 5.1% | T164S (ACC→TCC) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,465,671 | C→G | 5.9% | pseudogene (280/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,138 | G→A | 11.5% | pseudogene (747/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,144 | G→T | 11.2% | pseudogene (753/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,336 | C→G | 8.8% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,345 | T→C | 6.8% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,491,904 | A→T | 5.6% | intergenic (+54/+18) | ydcA → / ← hokB | putative periplasmic protein/toxic polypeptide, small |
| RA | 1,552,191 | C→A | 25.7% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,555,781 | G→C | 5.1% | intergenic (‑112/+45) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,560,803 | C→T | 5.4% | D43N (GAC→AAC) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,560,806 | C→T | 5.4% | G42S (GGT→AGT) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,560,807 | C→G | 5.4% | A41A (GCG→GCC) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,560,810 | C→G | 5.1% | L40L (CTG→CTC) ‡ | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,560,811 | A→G | 5.2% | L40P (CTG→CCG) ‡ | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,560,814 | A→G | 5.1% | L39S (TTA→TCA) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,707,031 | C→A | 5.8% | P38H (CCC→CAC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,652 | G→C | 9.1% | A578A (GCG→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,709 | T→A | 13.5% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 19.8% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,847 | G→A | 17.4% | E643E (GAG→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,994 | A→C | 15.2% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,737,435 | A→G | 5.2% | intergenic (‑145/+21) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,737,438 | C→T | 5.2% | intergenic (‑148/+18) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,737,439 | G→T | 5.2% | intergenic (‑149/+17) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,770,203 | T→A | 6.8% | intergenic (+17/‑169) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,204 | C→G | 6.9% | intergenic (+18/‑168) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,205 | T→A | 6.8% | intergenic (+19/‑167) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,792,241 | A→T | 6.3% | intergenic (‑221/+26) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,795,227 | A→T | 5.3% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 5.8% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 5.6% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,830,060 | G→C | 8.2% | R236G (CGC→GGC) | astA ← | arginine succinyltransferase |
| RA | 1,830,061 | G→T | 8.8% | A235A (GCC→GCA) | astA ← | arginine succinyltransferase |
| RA | 1,830,064 | A→C | 7.7% | P234P (CCT→CCG) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,830,065 | G→C | 8.1% | P234R (CCT→CGT) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,865,682 | G→C | 10.9% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,912,748 | T→G | 5.1% | intergenic (‑172/+20) | htpX ← / ← prc | putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,912,751 | C→A | 5.1% | intergenic (‑175/+17) | htpX ← / ← prc | putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,926,882 | C→A | 5.0% | G653V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,928,799 | A→C | 8.1% | L14R (CTT→CGT) | ptrB ← | protease II |
| RA | 1,928,802 | G→T | 7.5% | T13K (ACG→AAG) | ptrB ← | protease II |
| RA | 1,944,233 | G→T | 5.3% | intergenic (+34/+113) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,944,234 | A→C | 5.6% | intergenic (+35/+112) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,987,857 | C→T | 5.6% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 5.8% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 5.6% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 5.9% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 2,074,687 | T→G | 8.0% | intergenic (+29/‑92) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,090,122 | A→G | 5.3% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 5.1% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 5.4% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,115,847 | G→T | 5.3% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 5.7% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 7.5% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,139,716 | T→G | 5.6% | intergenic (+231/+43) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,720 | C→A | 5.6% | intergenic (+235/+39) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,400 | G→A | 8.3% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,401 | T→C | 7.4% | P404P (CCA→CCG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,141,904 | C→G | 5.0% | V104V (GTG→GTC) ‡ | dcd ← | deoxycytidine triphosphate deaminase; dCTP deaminase |
| RA | 2,141,906 | C→T | 5.5% | V104M (GTG→ATG) ‡ | dcd ← | deoxycytidine triphosphate deaminase; dCTP deaminase |
| RA | 2,171,814 | A→G | 5.1% | intergenic (‑87/+19) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,171,816 | C→G | 5.9% | intergenic (‑89/+17) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,171,818 | C→T | 5.1% | intergenic (‑91/+15) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,230,416 | G→C | 5.1% | intergenic (‑31/‑208) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,236,664 | G→T | 5.2% | intergenic (+164/+79) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,252,804 | C→A | 5.3% | intergenic (+16/+91) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,810 | T→G | 5.7% | intergenic (+22/+85) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,820 | T→G | 5.6% | intergenic (+32/+75) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,821 | T→C | 5.2% | intergenic (+33/+74) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,270,602 | T→C | 6.2% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 6.0% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,286,139 | A→T | 5.7% | intergenic (+3/‑72) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,286,142 | T→A | 5.5% | intergenic (+6/‑69) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,314,801 | G→T | 5.6% | Q438H (CAG→CAT) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,367,941 | C→A | 11.6% | L291I (CTC→ATC) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,407,898 | A→C | 5.2% | Q113P (CAG→CCG) | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,411,408 | A→T | 5.3% | intergenic (‑56/+31) | yfbS ← / ← yfbT | putative transporter/sugar phosphatas |
| RA | 2,411,410 | G→T | 5.3% | intergenic (‑58/+29) | yfbS ← / ← yfbT | putative transporter/sugar phosphatas |
| RA | 2,411,411 | A→C | 5.3% | intergenic (‑59/+28) | yfbS ← / ← yfbT | putative transporter/sugar phosphatas |
| RA | 2,411,413 | A→T | 5.1% | intergenic (‑61/+26) | yfbS ← / ← yfbT | putative transporter/sugar phosphatas |
| RA | 2,449,202 | A→T | 5.1% | intergenic (+45/+26) | smrB → / ← yfcO | putative DNA endonuclease/DUF2544 family putative outer membrane protein |
| RA | 2,464,228 | C→A | 7.6% | intergenic (+158/+24) | yfdF → / ← mlaA | uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,470,482 | C→A | 7.7% | intergenic (+20/‑333) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| RA | 2,477,014 | C→A | 8.8% | A206S (GCA→TCA) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,016 | T→A | 9.4% | Q205L (CAG→CTG) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,018 | T→A | 9.8% | R204S (AGA→AGT) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,020 | T→A | 8.4% | R204* (AGA→TGA) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,022 | T→G | 8.9% | D203A (GAC→GCC) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,521,346 | A→T | 6.3% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,525,907 | G→A | 5.7% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 5.9% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,555,201 | T→C | 6.4% | intergenic (‑19/+27) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,555,202 | G→C | 6.4% | intergenic (‑20/+26) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,555,205 | G→C | 6.6% | intergenic (‑23/+23) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,555,206 | G→A | 6.2% | intergenic (‑24/+22) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,560,985 | C→A | 17.0% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,563,266 | A→T | 5.4% | intergenic (+149/‑326) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,630,920 | T→C | 5.0% | intergenic (+55/+38) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,653,367 | G→A | 6.1% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 5.9% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,673,790 | G→T | 5.7% | intergenic (+22/+26) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,742,794 | G→T | 5.1% | E138* (GAA→TAA) ‡ | yfiN → | putative membrane‑anchored diguanylate cyclase |
| RA | 2,742,795 | A→T | 5.1% | E138V (GAA→GTA) ‡ | yfiN → | putative membrane‑anchored diguanylate cyclase |
| RA | 2,742,796 | A→C | 5.6% | E138D (GAA→GAC) ‡ | yfiN → | putative membrane‑anchored diguanylate cyclase |
| RA | 2,788,676 | A→T | 5.3% | intergenic (+27/‑309) | ygaQ → / → csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| RA | 2,800,515 | C→A | 6.5% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 6.5% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 8.3% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,810,872 | C→T | 6.6% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 6.1% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,839,323 | T→A | 5.3% | intergenic (‑59/‑201) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,326 | C→G | 5.0% | intergenic (‑62/‑198) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,856,258 | G→C | 5.4% | E641Q (GAG→CAG) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,859,832 | G→C | 5.1% | G25R (GGT→CGT) | pphB → | serine/threonine‑specific protein phosphatase 2 |
| RA | 2,863,768 | A→G | 6.0% | Q59R (CAG→CGG) | ygbL → | putative class II aldolase |
| RA | 2,863,772 | G→A | 6.8% | R60R (CGG→CGA) | ygbL → | putative class II aldolase |
| RA | 2,863,777 | C→G | 6.0% | S62C (TCC→TGC) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,778 | C→G | 6.4% | S62S (TCC→TCG) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,783 | T→C | 6.0% | V64A (GTC→GCC) | ygbL → | putative class II aldolase |
| RA | 2,884,577 | T→C | 5.8% | R881R (AGA→AGG) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,884,578 | C→A | 5.6% | R881I (AGA→ATA) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,884,579 | T→G | 5.5% | R881R (AGA→CGA) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,884,580 | G→A | 6.0% | T880T (ACC→ACT) | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,900,322 | C→T | 5.7% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,324 | G→T | 5.2% | intergenic (‑51/‑268) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,327 | A→C | 5.2% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,907,487 | T→A | 6.6% | N152I (AAC→ATC) | eno ← | enolase |
| RA | 2,911,007 | G→A | 5.7% | R29C (CGT→TGT) | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,008 | A→T | 5.7% | H28Q (CAT→CAA) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,009 | T→C | 5.6% | H28R (CAT→CGT) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 3,050,713 | A→T | 5.6% | intergenic (‑46/+402) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,066,310 | A→T | 5.5% | H288Q (CAT→CAA) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,068,922 | G→T | 5.2% | intergenic (‑114/+25) | argO ← / ← mscS | arginine transporter/mechanosensitive channel protein, small conductance |
| RA | 3,068,924 | G→A | 5.0% | intergenic (‑116/+23) | argO ← / ← mscS | arginine transporter/mechanosensitive channel protein, small conductance |
| RA | 3,068,927 | T→C | 5.0% | intergenic (‑119/+20) | argO ← / ← mscS | arginine transporter/mechanosensitive channel protein, small conductance |
| RA | 3,105,533 | G→C | 5.2% | intergenic (+21/‑181) | mltC → / → nupG | membrane‑bound lytic murein transglycosylase C/nucleoside transporter |
| RA | 3,136,629 | C→A | 5.2% | intergenic (‑258/+34) | pitB ← / ← gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,167,883 | T→C | 5.1% | K122E (AAG→GAG) | mqsA ← | antitoxin for MqsR toxin; transcriptional repressor |
| RA | 3,194,609 | T→A | 5.3% | intergenic (+84/+114) | yqiK → / ← sibD | PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein |
| RA | 3,215,695 | A→T | 5.5% | intergenic (+22/+32) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,215,696 | A→T | 5.2% | intergenic (+23/+31) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,215,697 | A→C | 5.7% | intergenic (+24/+30) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,229,624 | C→A | 10.1% | T246K (ACG→AAG) | ygjK → | alpha‑glucosidase |
| RA | 3,238,464 | A→C | 5.0% | intergenic (+167/‑116) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,240,553 | C→A | 6.0% | L204M (CTG→ATG) | sstT → | sodium:serine/threonine symporter |
| RA | 3,246,564 | C→A | 5.3% | intergenic (+42/‑88) | exuT → / → exuR | hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor |
| RA | 3,250,989 | G→C | 6.7% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 6.8% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 6.3% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 5.5% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,291,109 | A→T | 5.8% | K766* (AAA→TAA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,291,110 | A→T | 5.9% | K766I (AAA→ATA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,300,232 | A→T | 5.4% | L89F (TTA→TTT) | yhbQ → | GIY‑YIG nuclease superfamily protein |
| RA | 3,328,182 | A→T | 5.7% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 5.8% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 5.8% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,360,643 | T→A | 8.8% | intergenic (+27/‑533) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,360,644 | G→C | 7.8% | intergenic (+28/‑532) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,360,645 | T→A | 8.0% | intergenic (+29/‑531) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,377,770 | A→C | 5.6% | intergenic (‑350/+45) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,406,129 | A→T | 5.4% | E71D (GAA→GAT) | accC → | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| RA | 3,458,110 | C→A | 100% | T578T (ACC→ACA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,482,325 | G→A | 100% | R346H (CGC→CAC) | yheS → | ABC‑F family protein predicted regulatory ATPase |
| RA | 3,486,217 | A→C | 6.1% | Q33P (CAG→CCG) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,218 | G→T | 5.4% | Q33H (CAG→CAT) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,225 | A→T | 5.7% | K36* (AAA→TAA) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,491,704 | G→T | 5.9% | intergenic (‑84/+21) | yhfG ← / ← ppiA | putative antitoxin for Fic/peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
| RA | 3,491,705 | A→C | 6.7% | intergenic (‑85/+20) | yhfG ← / ← ppiA | putative antitoxin for Fic/peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
| RA | 3,529,746 | A→T | 5.4% | E133D (GAA→GAT) | hslR → | ribosome‑associated heat shock protein Hsp15 |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,628,220 | G→T | 9.9% | P440Q (CCG→CAG) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,781,103 | A→C | 13.9% | intergenic (+86/‑112) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,853,674 | G→T | 5.4% | intergenic (+32/‑248) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,675 | A→T | 5.5% | intergenic (+33/‑247) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,676 | A→T | 6.1% | intergenic (+34/‑246) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,677 | A→C | 7.0% | intergenic (+35/‑245) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,918,296 | C→T | 5.3% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,299 | A→G | 5.1% | intergenic (‑34/+17) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,304 | A→G | 5.3% | intergenic (‑39/+12) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,953,432 | C→T | 5.4% | intergenic (+19/‑46) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,433 | A→G | 5.6% | intergenic (+20/‑45) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,437 | A→G | 6.3% | intergenic (+24/‑41) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,959,926 | A→T | 5.7% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,966,876 | A→C | 8.1% | T154P (ACT→CCT) | rho → | transcription termination factor |
| RA | 3,967,404 | G→T | 6.9% | V330F (GTT→TTT) | rho → | transcription termination factor |
| RA | 3,972,673 | A→C | 6.7% | E51A (GAG→GCG) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,674 | G→T | 5.9% | E51D (GAG→GAT) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,995,716 | A→G | 5.1% | H45R (CAT→CGT) | yigA → | DUF484 family protein |
| RA | 3,995,720 | G→C | 5.1% | P46P (CCG→CCC) | yigA → | DUF484 family protein |
| RA | 3,995,722 | T→G | 5.1% | V47G (GTA→GGA) | yigA → | DUF484 family protein |
| RA | 3,995,724 | C→T | 5.1% | R48C (CGC→TGC) | yigA → | DUF484 family protein |
| RA | 4,051,259 | G→T | 5.6% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 6.0% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,062,811 | C→A | 5.9% | L189M (CTG→ATG) ‡ | yihN → | MFS transporter family protein |
| RA | 4,062,813 | G→T | 5.0% | L189L (CTG→CTT) ‡ | yihN → | MFS transporter family protein |
| RA | 4,070,463 | T→A | 5.9% | intergenic (‑62/+52) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,464 | T→A | 5.9% | intergenic (‑63/+51) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,469 | A→C | 6.4% | intergenic (‑68/+46) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,114,536 | C→T | 7.2% | intergenic (‑64/+33) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,537 | G→T | 7.4% | intergenic (‑65/+32) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,538 | A→C | 6.8% | intergenic (‑66/+31) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,539 | A→G | 6.9% | intergenic (‑67/+30) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,147,304 | G→C | 6.2% | R56P (CGG→CCG) | frwD → | putative enzyme IIB component of PTS |
| RA | 4,189,448 | C→T | 22.7% | Q1367* (CAG→TAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,277,223 | A→T | 5.1% | I54N (ATT→AAT) | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,277,225 | G→A | 5.2% | Y53Y (TAC→TAT) ‡ | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,277,226 | T→C | 5.2% | Y53C (TAC→TGC) ‡ | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,277,228 | A→T | 5.6% | D52E (GAT→GAA) | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,281,677 | T→A | 5.1% | intergenic (+48/+106) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,283,228 | T→G | 6.7% | intergenic (‑153/+25) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| RA | 4,296,060 | C→T | 32.2% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,297,193 | G→T | 5.1% | intergenic (‑68/+26) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,297,194 | A→T | 5.5% | intergenic (‑69/+25) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,297,195 | A→T | 5.6% | intergenic (‑70/+24) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,297,196 | A→C | 6.7% | intergenic (‑71/+23) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,317,978 | A→C | 6.2% | intergenic (‑83/+28) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,984 | T→A | 5.9% | intergenic (‑89/+22) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,985 | T→A | 5.9% | intergenic (‑90/+21) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,991 | G→T | 6.4% | intergenic (‑96/+15) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,992 | C→T | 6.3% | intergenic (‑97/+14) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,365,132 | T→G | 5.4% | A75A (GCA→GCC) ‡ | cutA ← | divalent‑cation tolerance protein, copper sensitivity |
| RA | 4,365,133 | G→C | 5.2% | A75G (GCA→GGA) ‡ | cutA ← | divalent‑cation tolerance protein, copper sensitivity |
| RA | 4,365,134 | C→A | 5.8% | A75S (GCA→TCA) ‡ | cutA ← | divalent‑cation tolerance protein, copper sensitivity |
| RA | 4,365,453 | A→C | 5.9% | intergenic (‑97/+19) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,367,700 | G→T | 5.6% | L210M (CTG→ATG) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,367,701 | G→C | 5.2% | I209M (ATC→ATG) ‡ | aspA ← | aspartate ammonia‑lyase |
| RA | 4,367,702 | A→C | 5.0% | I209S (ATC→AGC) ‡ | aspA ← | aspartate ammonia‑lyase |
| RA | 4,376,710 | T→C | 5.3% | intergenic (+11/‑165) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,376,717 | G→C | 5.0% | intergenic (+18/‑158) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,376,720 | G→C | 5.1% | intergenic (+21/‑155) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,390,401 | C→A | 6.5% | intergenic (‑41/+56) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,403 | A→G | 6.7% | intergenic (‑43/+54) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,404 | C→T | 6.8% | intergenic (‑44/+53) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,406 | T→G | 5.5% | intergenic (‑46/+51) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,392,567 | G→T | 19.6% | intergenic (+20/‑16) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,439,845 | T→A | 6.5% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,473,927 | C→A | 100% | A43S (GCC→TCC) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,520,500 | Δ1 bp | 5.2% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,638,690 | C→T | 6.2% | G171G (GGC→GGT) | creD → | inner membrane protein |
| RA | 4,638,691 | A→G | 6.2% | T172A (ACC→GCC) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 448610 | 450703 | 2094 | 66 [65] | [65] 66 | [cyoC]–[cyoA] | [cyoC],cyoB,[cyoA] |
| * | * | ÷ | NC_000913 | 1166010 | 1167441 | 1432 | 66 [64] | [64] 68 | ndh | ndh |
| * | * | ÷ | NC_000913 | 3423670–3424234 | 3424605–3424238 | 5–936 | 66 [65] | [65] 67 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 274347 = | NA (NA) | 6 (0.060) | 6/264 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 3 (0.030) | 3/264 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 7 (0.070) | 4/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 6 (0.060) | 4/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 5 (0.050) | 5/268 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 5 (0.050) | 3/264 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 8 (0.080) | 4/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 3 (0.030) | 3/260 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 618054 = | 114 (1.020) | 7 (0.070) | 5/252 | NT | 6.4% | intergenic (+16/‑200) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains |
| ? | NC_000913 | 618087 = | 103 (1.010) | intergenic (+49/‑167) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
| * | ? | NC_000913 | 780922 = | 111 (0.990) | 6 (0.060) | 4/262 | NT | 5.5% | intergenic (+4/‑146) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | NC_000913 | 780945 = | 101 (0.960) | intergenic (+27/‑123) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
| * | ? | NC_000913 | 781369 = | 51 (0.450) | 24 (0.220) +G |
12/276 | NT | 38.6% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 26 (0.230) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | = 781446 | 57 (0.510) | 13 (0.140) | 13/238 | NT | 16.1% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 2521487 = | 87 (0.910) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | 1190580 = | NA (NA) | 4 (0.040) | 4/266 | NT | NA | noncoding (1/23 nt) | REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1190603 = | NA (NA) | intergenic (‑156/+13) | phoP/purB | response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase | |||||
| * | ? | NC_000913 | 1207790 = | 36 (0.320) | 35 (0.350) | 33/246 | NT | 51.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 35 (0.350) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 31 (0.280) | 38 (0.380) | 32/246 | NT | 54.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 35 (0.350) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1209553 | 45 (0.400) | 4 (0.040) | 4/262 | NT | 9.6% | pseudogene (67/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| ? | NC_000913 | = 1209584 | 33 (0.310) | pseudogene (36/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1294158 = | 107 (0.950) | 5 (0.050) | 4/260 | NT | 5.1% | intergenic (+14/+268) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog |
| ? | NC_000913 | 1294195 = | 86 (0.820) | intergenic (+51/+231) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 118 (1.080) | 87/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 14 (0.130) | 7/266 | NT | 10.1% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 130 (1.160) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1440443 | 88 (0.790) | 5 (0.050) | 4/264 | NT | 5.5% | coding (342/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 89 (0.840) | coding (321/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | 1679300 = | 101 (0.900) | 5 (0.050) | 4/260 | NT | 5.2% | coding (874/945 nt) | ydgH | DUF1471 family periplasmic protein |
| ? | NC_000913 | 1679340 = | 89 (0.850) | coding (914/945 nt) | ydgH | DUF1471 family periplasmic protein | |||||
| * | ? | NC_000913 | = 2355579 | 115 (1.030) | 6 (0.060) | 4/270 | NT | 5.0% | coding (59/1191 nt) | glpC | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster |
| ? | NC_000913 | = 2355607 | 114 (1.050) | coding (87/1191 nt) | glpC | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster | |||||
| * | ? | NC_000913 | 2805836 = | 122 (1.090) | 7 (0.070) | 5/266 | NT | 5.9% | coding (1022/1203 nt) | proV | glycine betaine/proline ABC transporter periplasmic binding protein |
| ? | NC_000913 | 2805856 = | 107 (1.000) | coding (1042/1203 nt) | proV | glycine betaine/proline ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2943600 | 93 (0.830) | 5 (0.050) | 4/262 | NT | 5.4% | coding (264/1206 nt) | csdA | cysteine sulfinate desulfinase |
| ? | NC_000913 | = 2943639 | 89 (0.840) | coding (303/1206 nt) | csdA | cysteine sulfinate desulfinase | |||||
| * | ? | NC_000913 | 2945896 = | NA (NA) | 6 (0.060) | 5/264 | NT | NA | noncoding (1/97 nt) | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3740989 = | NA (NA) | noncoding (26/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3520371 = | 119 (1.060) | 6 (0.060) | 4/264 | NT | 5.2% | coding (333/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter |
| ? | NC_000913 | 3520402 = | 107 (1.010) | coding (302/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter | |||||
| * | ? | NC_000913 | 3741341 = | 82 (0.730) | 5 (0.050) | 4/268 | NT | 6.0% | coding (242/474 nt) | ysaA | putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| ? | NC_000913 | 3741376 = | 78 (0.720) | coding (207/474 nt) | ysaA | putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | NC_000913 | 3943176 = | NA (NA) | 3 (0.030) | 3/272 | NT | 100% | noncoding (1369/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 3943221 = | 0 (0.000) | noncoding (1414/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 4035244 | 66 (0.590) | 4 (0.040) | 3/268 | NT | 7.8% | intergenic (+91/‑287) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4166399 | 31 (0.290) | intergenic (+114/‑260) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 4168332 = | 81 (0.720) | 4 (0.040) | 3/258 | NT | 5.9% | intergenic (+132/‑40) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | 4168374 = | 52 (0.500) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | 4312015 = | 95 (0.850) | 5 (0.050) | 3/258 | NT | 5.5% | coding (28/936 nt) | alsB | D‑allose ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4312112 = | 83 (0.800) | coding (880/891 nt) | alsR | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR | |||||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 6 (0.060) | 4/266 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
| * | ? | NC_000913 | 4542682 = | 85 (0.760) | 20 (0.190) | 19/260 | NT | 18.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 95 (0.910) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 87 (0.780) | 27 (0.260) | 24/260 | NT | 23.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 95 (0.910) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4549783 = | NA (NA) | 4 (0.040) | 4/266 | NT | NA | noncoding (1/36 nt) | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4549825 = | NA (NA) | intergenic (+115/+128) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||