mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4289415 | 203 (1.330) | 3 (0.020) | 3/268 | NT | 1.5% | coding (171/567 nt) | nrfB | nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| ? | NC_000913 | = 4289418 | 202 (1.370) | coding (174/567 nt) | nrfB | nitrite reductase, formate‑dependent, penta‑heme cytochrome c | |||||
| * | ? | NC_000913 | = 4006621 | 161 (1.050) | 3 (0.020) | 3/270 | NT | 1.8% | coding (758/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | NC_000913 | = 4006652 | 166 (1.120) | coding (789/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | NC_000913 | = 3567752 | 149 (0.970) | 4 (0.030) | 4/260 | NT | 2.7% | coding (282/1434 nt) | glgA | glycogen synthase |
| ? | NC_000913 | = 3567848 | 152 (1.060) | coding (186/1434 nt) | glgA | glycogen synthase | |||||
| * | ? | NC_000913 | = 2858336 | 128 (0.840) | 3 (0.020) | 3/268 | NT | 2.3% | coding (1244/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| ? | NC_000913 | = 2858358 | 132 (0.890) | coding (1266/2562 nt) | mutS | methyl‑directed mismatch repair protein | |||||
| * | ? | NC_000913 | = 1463445 | 117 (0.760) | 6 (0.040) | 3/264 | NT | 4.6% | intergenic (+7/‑94) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913 | = 1463482 | 135 (0.930) | intergenic (+44/‑57) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||
| * | ? | NC_000913 | 925857 = | 141 (0.920) | 4 (0.030) +ACGGGCTTTTT |
4/256 | NT | 3.8% | intergenic (+317/+27) | clpA/serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| ? | NC_000913 | 1097557 = | 80 (0.520) | intergenic (+728/+8) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 803340 = | 160 (1.050) | 3 (0.020) | 3/264 | NT | 1.9% | intergenic (+20/‑163) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein |
| ? | NC_000913 | 803431 = | 152 (1.050) | intergenic (+111/‑72) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||
| * | ? | NC_000913 | 790857 = | 139 (0.910) | 3 (0.020) | 3/256 | NT | 2.2% | coding (173/1047 nt) | galT | galactose‑1‑phosphate uridylyltransferase |
| ? | NC_000913 | 790898 = | 140 (0.990) | coding (132/1047 nt) | galT | galactose‑1‑phosphate uridylyltransferase | |||||
| * | ? | NC_000913 | = 288413 | 174 (1.140) | 6 (0.040) | 3/260 | NT | 3.2% | coding (750/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 288439 | 199 (1.390) | coding (724/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||