mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 61 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4635837 = | 245 (1.010) | 5 (0.020) | 3/268 | NT | 2.1% | coding (317/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | 4635885 = | 237 (1.000) | coding (365/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | NC_000913 | 4621634 = | 261 (1.070) | 6 (0.030) | 6/256 | NT | 2.6% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 213 (0.950) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 4615036 | 309 (1.270) | 7 (0.030) | 3/264 | NT | 2.4% | coding (508/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4615110 | 274 (1.180) | coding (434/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4542682 = | 242 (1.000) | 8 (0.040) | 4/258 | NT | 3.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 249 (1.100) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4341778 = | 212 (0.870) | 3 (0.010) | 3/240 | NT | 1.7% | intergenic (‑150/‑133) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | 4341834 = | 159 (0.750) | intergenic (‑206/‑77) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4298618 = | 269 (1.110) | 7 (0.030) | 4/260 | NT | 2.7% | coding (749/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913 | 4298654 = | 257 (1.120) | coding (713/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | NC_000913 | = 4271029 | 268 (1.100) | 10 (0.040) | 7/258 | NT | 3.7% | intergenic (+15/+20) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | = 4271034 | 270 (1.190) | intergenic (+20/+15) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | = 4236360 | 262 (1.080) | 3 (0.010) | 3/268 | NT | 1.2% | coding (99/639 nt) | yjbF | extracellular polysaccharide production lipoprotein |
| ? | NC_000913 | = 4236437 | 255 (1.080) | coding (176/639 nt) | yjbF | extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913 | 4168510 = | 291 (1.200) | 4 (0.020) | 3/254 | NT | 2.8% | intergenic (+63/‑131) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4209894 = | 10 (0.040) | intergenic (+45/‑149) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4099447 = | 287 (1.180) | 3 (0.010) | 3/274 | NT | 1.1% | coding (802/849 nt) | rhaR | transcriptional activator of rhaSR |
| ? | NC_000913 | 4099477 = | 263 (1.090) | coding (832/849 nt) | rhaR | transcriptional activator of rhaSR | |||||