mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 46 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4583170 | 244 (1.000) | 9 (0.040) | 4/266 | NT | 3.7% | intergenic (‑122/+79) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583190 | 231 (0.990) | intergenic (‑142/+59) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4542690 | 198 (0.810) | 4 (0.020) | 4/260 | NT | 2.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 195 (0.850) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 190 (0.780) | 8 (0.040) | 5/260 | NT | 4.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 195 (0.850) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4456720 = | 214 (0.880) | 3 (0.010) | 3/262 | NT | 1.4% | coding (936/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | NC_000913 | 4456794 = | 207 (0.900) | coding (1010/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
| * | ? | NC_000913 | = 4314993 | 231 (0.950) | 8 (0.030) | 4/272 | NT | 3.4% | coding (110/759 nt) | phnP | 5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| ? | NC_000913 | = 4315042 | 224 (0.940) | coding (61/759 nt) | phnP | 5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase | |||||
| * | ? | NC_000913 | 4245384 = | 353 (1.450) | 4 (0.020) | 3/268 | NT | 1.2% | coding (1036/1191 nt) | malE | maltose transporter subunit |
| ? | NC_000913 | 4245411 = | 307 (1.300) | coding (1009/1191 nt) | malE | maltose transporter subunit | |||||
| * | ? | NC_000913 | = 4168341 | 132 (0.540) | 6 (0.030) | 4/258 | NT | 4.6% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 125 (0.550) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4094350 | 304 (1.240) | 4 (0.020) | 4/196 | NT | 1.8% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 227 (1.320) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 3998038 = | 221 (0.910) | 6 (0.030) | 4/264 | NT | 2.8% | coding (56/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | 3998077 = | 213 (0.920) | coding (95/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||
| * | ? | NC_000913 | = 3993712 | 206 (0.840) | 4 (0.020) | 3/264 | NT | 2.0% | intergenic (+13/+27) | cyaA/cyaY | adenylate cyclase/iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein |
| ? | NC_000913 | = 3993724 | 198 (0.850) | intergenic (+25/+15) | cyaA/cyaY | adenylate cyclase/iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein | |||||