mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 223 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4635837 = | 94 (0.880) | 4 (0.040) | 4/270 | NT | 4.3% | coding (317/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | 4635885 = | 87 (0.840) | coding (365/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 3 (0.030) | 3/262 | NT | 2.5% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 119 (1.160) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 4611642 | 107 (1.000) | 4 (0.040) | 4/266 | NT | 3.8% | coding (247/606 nt) | osmY | salt‑inducible putative ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 4611664 | 99 (0.970) | coding (269/606 nt) | osmY | salt‑inducible putative ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 4596719 | 88 (0.830) | 3 (0.030) | 3/272 | NT | 3.4% | coding (730/1023 nt) | lgoD | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase |
| ? | NC_000913 | = 4596767 | 83 (0.800) | coding (778/1023 nt) | lgoD | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase | |||||
| * | ? | NC_000913 | = 4558313 | 104 (0.980) | 3 (0.030) | 3/254 | NT | 2.9% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | = 4558336 | 109 (1.120) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | = 4542690 | 111 (1.040) | 5 (0.050) | 5/260 | NT | 4.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 110 (1.100) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4522467 | 90 (0.840) | 4 (0.040) | 3/258 | NT | 4.4% | coding (1628/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | = 4522490 | 90 (0.910) | coding (1605/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | = 4516187 | 87 (0.820) | 3 (0.030) | 3/264 | NT | 3.4% | coding (491/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| ? | NC_000913 | = 4516268 | 90 (0.890) | coding (410/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein | |||||
| * | ? | NC_000913 | = 4503249 | 118 (1.110) | 3 (0.030) | 3/262 | NT | 2.5% | noncoding (267/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | = 4503289 | 119 (1.190) | noncoding (227/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 4486252 = | 90 (0.840) | 3 (0.030) | 3/262 | NT | 3.3% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 89 (0.890) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||