mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 10,620 | A→T | 5.1% | intergenic (‑126/+23) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 60,259 | T→G | 5.6% | S30R (AGC→CGC) | rluA ← | dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 103,614 | A→T | 5.2% | K154* (AAG→TAG) | ftsQ → | divisome assembly protein, membrane anchored protein involved in growth of wall at septum |
| RA | 114,507 | A→T | 5.6% | intergenic (+20/+15) | guaC → / ← hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 114,510 | A→T | 5.3% | intergenic (+23/+12) | guaC → / ← hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 114,511 | A→C | 5.8% | intergenic (+24/+11) | guaC → / ← hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 124,856 | G→T | 5.2% | A614S (GCG→TCG) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,859 | G→C | 5.6% | A615P (GCT→CCT) ‡ | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,861 | T→A | 5.8% | A615A (GCT→GCA) ‡ | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,863 | G→C | 5.6% | G616A (GGC→GCC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,866 | A→C | 5.4% | D617A (GAC→GCC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 125,817 | A→G | 5.9% | K41K (AAA→AAG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,093 | T→C | 6.6% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 136,532 | G→C | 5.4% | intergenic (‑68/+38) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 136,535 | G→C | 5.4% | intergenic (‑71/+35) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 136,537 | A→G | 5.4% | intergenic (‑73/+33) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 165,038 | T→G | 5.7% | P103P (CCT→CCG) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 165,039 | G→C | 5.8% | A104P (GCG→CCG) ‡ | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 165,040 | C→A | 6.0% | A104E (GCG→GAG) ‡ | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 209,171 | A→G | 5.4% | N184S (AAC→AGC) ‡ | accA → | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit |
| RA | 209,172 | C→G | 5.8% | N184K (AAC→AAG) ‡ | accA → | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit |
| RA | 209,173 | C→T | 5.3% | L185L (CTG→TTG) | accA → | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit |
| RA | 231,007 | C→A | 7.4% | intergenic (‑126/‑115) | yafC ← / → yafD | LysR family putative transcriptional regulator/endo/exonuclease/phosphatase family protein |
| RA | 231,008 | T→G | 6.3% | intergenic (‑127/‑114) | yafC ← / → yafD | LysR family putative transcriptional regulator/endo/exonuclease/phosphatase family protein |
| RA | 252,589 | G→C | 6.1% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 5.2% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 254,223 | A→T | 5.6% | intergenic (+21/+36) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,228 | A→T | 5.2% | intergenic (+26/+31) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,233 | A→T | 5.7% | intergenic (+31/+26) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,238 | A→T | 6.4% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 256,449 | T→C | 7.9% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 7.7% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 8.5% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 263,351 | T→A | 5.8% | S107C (AGC→TGC) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 263,353 | T→A | 5.8% | Q106L (CAA→CTA) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 285,202 | T→A | 5.1% | intergenic (+34/‑193) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 304,790 | T→G | 6.2% | E139A (GAG→GCG) | ecpE ← | ECP production pilus chaperone |
| RA | 304,800 | C→G | 5.2% | V136L (GTC→CTC) | ecpE ← | ECP production pilus chaperone |
| RA | 304,806 | C→A | 6.1% | G134C (GGC→TGC) | ecpE ← | ECP production pilus chaperone |
| RA | 314,258 | G→A | 5.1% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 318,649 | T→C | 6.3% | intergenic (‑82/+27) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,651 | T→A | 6.5% | intergenic (‑84/+25) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,652 | T→A | 6.5% | intergenic (‑85/+24) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,654 | G→A | 6.5% | intergenic (‑87/+22) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 324,585 | G→A | 5.1% | intergenic (+132/+111) | ykgG → / ← ykgH | LutC family protein; putative electron transport chain YkgEFG component/putative inner membrane protein |
| RA | 324,874 | T→G | 5.4% | N164T (AAC→ACC) ‡ | ykgH ← | putative inner membrane protein |
| RA | 324,875 | T→A | 5.0% | N164Y (AAC→TAC) ‡ | ykgH ← | putative inner membrane protein |
| RA | 324,876 | C→A | 5.2% | R163S (AGG→AGT) | ykgH ← | putative inner membrane protein |
| RA | 328,375 | A→C | 5.2% | I120S (ATC→AGC) | betB ← | betaine aldehyde dehydrogenase, NAD‑dependent |
| RA | 329,503 | A→G | 7.5% | N14S (AAT→AGT) | betT → | choline transporter of high affinity |
| RA | 329,509 | T→C | 8.0% | V16A (GTG→GCG) | betT → | choline transporter of high affinity |
| RA | 329,512 | T→A | 6.9% | V17E (GTG→GAG) | betT → | choline transporter of high affinity |
| RA | 329,514 | T→G | 6.8% | F18V (TTT→GTT) ‡ | betT → | choline transporter of high affinity |
| RA | 329,516 | T→G | 6.8% | F18L (TTT→TTG) ‡ | betT → | choline transporter of high affinity |
| RA | 329,519 | C→A | 6.8% | Y19* (TAC→TAA) | betT → | choline transporter of high affinity |
| RA | 329,521 | C→A | 6.6% | T20N (ACC→AAC) | betT → | choline transporter of high affinity |
| RA | 329,523 | T→A | 6.4% | S21T (TCC→ACC) | betT → | choline transporter of high affinity |
| RA | 329,526 | G→A | 6.8% | A22T (GCC→ACC) | betT → | choline transporter of high affinity |
| RA | 329,532 | C→T | 7.2% | L24L (CTG→TTG) | betT → | choline transporter of high affinity |
| RA | 357,778 | C→T | 6.6% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 361,901 | T→G | 5.6% | intergenic (‑41/+25) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 399,810 | A→C | 5.3% | intergenic (+5/+19) | yaiZ → / ← ddlA | DUF2754 family putative inner membrane protein/D‑alanine‑D‑alanine ligase A |
| RA | 399,815 | C→T | 5.2% | intergenic (+10/+14) | yaiZ → / ← ddlA | DUF2754 family putative inner membrane protein/D‑alanine‑D‑alanine ligase A |
| RA | 403,178 | T→C | 9.6% | intergenic (+16/‑103) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 403,182 | T→A | 9.6% | intergenic (+20/‑99) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 403,183 | T→A | 9.4% | intergenic (+21/‑98) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 403,187 | G→A | 9.3% | intergenic (+25/‑94) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 431,107 | A→T | 5.7% | intergenic (+155/+22) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 431,109 | A→T | 6.1% | intergenic (+157/+20) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 431,111 | A→T | 5.8% | intergenic (+159/+18) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 441,069 | A→T | 5.7% | V11V (GTT→GTA) ‡ | ispA ← | geranyltranstransferase |
| RA | 441,071 | C→A | 5.0% | V11F (GTT→TTT) ‡ | ispA ← | geranyltranstransferase |
| RA | 443,022 | G→A | 5.4% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 5.5% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 454,853 | T→C | 7.4% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 5.8% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 475,971 | C→G | 6.0% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 6.1% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 492,230 | C→A | 5.5% | R47S (CGT→AGT) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 518,860 | A→G | 5.0% | F97S (TTC→TCC) | ybbO ← | putative oxidoreductase |
| RA | 525,739 | G→C | 5.9% | E827Q (GAG→CAG) ‡ | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 525,740 | A→T | 5.9% | E827V (GAG→GTG) ‡ | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 525,741 | G→C | 5.9% | E827D (GAG→GAC) ‡ | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 543,091 | G→C | 6.1% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 556,018 | G→A | 6.0% | intergenic (+22/+14) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,019 | T→A | 6.0% | intergenic (+23/+13) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,020 | T→A | 6.0% | intergenic (+24/+12) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,021 | T→C | 6.1% | intergenic (+25/+11) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,641 | G→T | 6.2% | intergenic (‑88/+20) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,642 | A→C | 6.0% | intergenic (‑89/+19) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 568,280 | C→G | 6.0% | intergenic (+33/‑35) | renD → / → emrE | pseudogene, DLP12 prophage;Phage or Prophage Related/DLP12 prophage; multidrug resistance protein |
| RA | 568,285 | C→G | 6.2% | intergenic (+38/‑30) | renD → / → emrE | pseudogene, DLP12 prophage;Phage or Prophage Related/DLP12 prophage; multidrug resistance protein |
| RA | 603,391 | C→G | 5.7% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 7.7% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 5.7% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 613,550 | G→C | 6.1% | A272P (GCC→CCC) ‡ | fes → | enterobactin/ferrienterobactin esterase |
| RA | 613,551 | C→A | 6.3% | A272D (GCC→GAC) ‡ | fes → | enterobactin/ferrienterobactin esterase |
| RA | 622,455 | G→C | 5.9% | W52C (TGG→TGC) | entS → | enterobactin exporter, iron‑regulated |
| RA | 645,069 | G→A | 6.2% | intergenic (‑66/+48) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,070 | G→A | 6.2% | intergenic (‑67/+47) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,073 | T→C | 6.3% | intergenic (‑70/+44) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,074 | T→C | 6.3% | intergenic (‑71/+43) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 654,560 | A→C | 7.6% | intergenic (+18/+23) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,563 | C→G | 7.5% | intergenic (+21/+20) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,566 | G→T | 7.4% | intergenic (+24/+17) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 659,205 | A→T | 5.0% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 662,683 | A→T | 5.1% | intergenic (‑41/+69) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 662,684 | G→T | 5.3% | intergenic (‑42/+68) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 662,685 | A→C | 5.8% | intergenic (‑43/+67) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 662,686 | A→T | 5.1% | intergenic (‑44/+66) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 691,858 | T→G | 6.2% | intergenic (‑74/+16) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 691,861 | A→T | 6.1% | intergenic (‑77/+13) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 691,862 | A→T | 6.2% | intergenic (‑78/+12) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 691,865 | C→A | 5.8% | intergenic (‑81/+9) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 696,793 | T→A | 37.5% | noncoding (38/75 nt) | glnW ← | tRNA‑Gln |
| RA | 696,798 | A→G | 32.2% | noncoding (33/75 nt) | glnW ← | tRNA‑Gln |
| RA | 696,801 | A→T | 29.6% | noncoding (30/75 nt) | glnW ← | tRNA‑Gln |
| RA | 715,339 | A→G | 5.8% | intergenic (+141/‑73) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 715,340 | A→C | 6.5% | intergenic (+142/‑72) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 715,346 | T→G | 5.7% | intergenic (+148/‑66) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 715,347 | C→A | 6.0% | intergenic (+149/‑65) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 715,353 | G→T | 6.2% | intergenic (+155/‑59) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 715,354 | C→T | 6.2% | intergenic (+156/‑58) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 723,608 | T→G | 5.8% | A269A (GCA→GCC) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| RA | 751,122 | G→C | 5.7% | Q350E (CAG→GAG) | ybgQ ← | putative outer membrane protein |
| RA | 752,066 | T→G | 5.2% | D35A (GAC→GCC) | ybgQ ← | putative outer membrane protein |
| RA | 756,643 | T→A | 5.6% | I246N (ATT→AAT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 774,356 | C→G | 5.5% | P16P (CCC→CCG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 774,358 | T→A | 5.4% | L17Q (CTG→CAG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 803,952 | C→T | 6.3% | S150S (AGC→AGT) | ybhJ → | aconitase family protein |
| RA | 824,949 | T→C | 5.6% | L107P (CTG→CCG) | ybhQ → | inner membrane protein |
| RA | 824,957 | C→A | 5.2% | L110I (CTT→ATT) | ybhQ → | inner membrane protein |
| RA | 848,356 | T→A | 7.2% | intergenic (‑352/+52) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 848,362 | A→G | 6.8% | intergenic (‑358/+46) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 850,993 | T→C | 6.3% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 6.4% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 6.0% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 6.4% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 858,420 | A→C | 5.4% | L214L (CTT→CTG) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,421 | A→T | 6.5% | L214H (CTT→CAT) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,424 | A→T | 5.3% | L213Q (CTG→CAG) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,425 | G→T | 5.2% | L213M (CTG→ATG) ‡ | ybiU ← | DUF1479 family protein |
| RA | 876,560 | C→G | 5.5% | A409G (GCA→GGA) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 876,568 | A→T | 6.4% | N412Y (AAT→TAT) ‡ | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 876,569 | A→T | 6.7% | N412I (AAT→ATT) ‡ | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 876,577 | C→G | 6.3% | P415A (CCT→GCT) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 892,455 | G→C | 5.6% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 5.6% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 7.3% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 894,952 | T→A | 7.1% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 900,205 | A→T | 5.3% | L124Q (CTG→CAG) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 940,751 | T→C | 5.1% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 5.2% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 958,769 | C→G | 5.7% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 6.1% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 7.6% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 959,667 | A→C | 5.3% | T286P (ACC→CCC) | aroA → | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 964,148 | T→C | 6.0% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 5.6% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 6.1% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 993,254 | A→G | 5.3% | intergenic (+20/+23) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,258 | G→T | 5.7% | intergenic (+24/+19) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,259 | C→T | 5.4% | intergenic (+25/+18) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 1,015,912 | T→A | 6.3% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,086,024 | C→A | 5.2% | L345I (CTT→ATT) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
| RA | 1,101,556 | T→G | 6.2% | P43P (CCA→CCC) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,557 | G→C | 5.9% | P43R (CCA→CGA) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,568 | C→A | 5.6% | L39F (TTG→TTT) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,104,931 | G→T | 5.7% | intergenic (+29/‑30) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,932 | C→T | 5.9% | intergenic (+30/‑29) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,933 | A→G | 5.8% | intergenic (+31/‑28) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,934 | A→C | 5.2% | intergenic (+32/‑27) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,118,623 | C→A | 6.0% | G142C (GGT→TGT) | yceJ ← | putative cytochrome b561 |
| RA | 1,118,628 | A→G | 5.6% | F140S (TTT→TCT) | yceJ ← | putative cytochrome b561 |
| RA | 1,118,630 | G→C | 5.6% | D139E (GAC→GAG) ‡ | yceJ ← | putative cytochrome b561 |
| RA | 1,118,632 | C→T | 5.5% | D139N (GAC→AAC) ‡ | yceJ ← | putative cytochrome b561 |
| RA | 1,118,637 | T→G | 6.9% | Q137P (CAG→CCG) | yceJ ← | putative cytochrome b561 |
| RA | 1,131,199 | G→C | 6.4% | S61T (AGT→ACT) ‡ | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,131,200 | T→A | 7.6% | S61R (AGT→AGA) ‡ | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,131,201 | G→C | 6.5% | V62L (GTG→CTG) | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,134,661 | A→G | 6.5% | intergenic (+104/‑68) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,662 | A→C | 6.6% | intergenic (+105/‑67) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,668 | T→A | 6.7% | intergenic (+111/‑61) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,669 | T→A | 6.6% | intergenic (+112/‑60) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,675 | G→T | 5.8% | intergenic (+118/‑54) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,676 | C→T | 6.1% | intergenic (+119/‑53) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,141,148 | C→T | 5.8% | intergenic (+162/+34) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,150 | G→A | 5.7% | intergenic (+164/+32) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,151 | T→C | 5.8% | intergenic (+165/+31) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,153 | A→G | 5.8% | intergenic (+167/+29) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,147,690 | G→A | 5.6% | A24T (GCA→ACA) ‡ | plsX → | putative phosphate acyltransferase |
| RA | 1,147,691 | C→T | 5.6% | A24V (GCA→GTA) ‡ | plsX → | putative phosphate acyltransferase |
| RA | 1,147,692 | A→G | 5.6% | A24A (GCA→GCG) ‡ | plsX → | putative phosphate acyltransferase |
| RA | 1,147,693 | T→C | 5.3% | L25L (TTG→CTG) | plsX → | putative phosphate acyltransferase |
| RA | 1,159,335 | G→T | 5.4% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 7.4% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,181,760 | A→G | 6.0% | intergenic (‑35/+23) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,181,761 | A→G | 6.0% | intergenic (‑36/+22) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,181,764 | C→T | 5.9% | intergenic (‑39/+19) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,181,765 | C→T | 5.9% | intergenic (‑40/+18) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,182,771 | G→C | 5.2% | A20G (GCC→GGC) | potD ← | spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,194,645:1 | +A | 6.6% | coding (307/654 nt) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,194,650 | G→A | 6.5% | P101L (CCG→CTG) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,194,653 | T→C | 6.5% | Q100R (CAG→CGG) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,194,657 | Δ1 bp | 6.6% | coding (295/654 nt) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,196,803 | A→C | 7.5% | intergenic (+430/+64) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,200,910 | T→A | 6.4% | Q41H (CAA→CAT) | xisE ← | e14 prophage; putative excisionase |
| RA | 1,200,913 | T→A | 6.0% | K40N (AAA→AAT) ‡ | xisE ← | e14 prophage; putative excisionase |
| RA | 1,200,914 | T→A | 6.5% | K40I (AAA→ATA) ‡ | xisE ← | e14 prophage; putative excisionase |
| RA | 1,200,915 | T→A | 5.9% | K40* (AAA→TAA) ‡ | xisE ← | e14 prophage; putative excisionase |
| RA | 1,200,918 | T→A | 5.7% | M39L (ATG→TTG) | xisE ← | e14 prophage; putative excisionase |
| RA | 1,204,409 | T→A | 7.6% | pseudogene (6/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,217,117 | C→A | 5.2% | intergenic (+121/‑211) | ymgC → / → ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 1,217,119 | C→A | 5.6% | intergenic (+123/‑209) | ymgC → / → ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 1,224,239 | A→T | 7.0% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 7.7% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,231,956:1 | +G | 5.2% | coding (771/1269 nt) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,232,481 | C→T | 5.9% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 5.9% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,233,154 | T→A | 5.2% | intergenic (‑124/+22) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,233,157 | T→A | 5.1% | intergenic (‑127/+19) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,272,542 | T→A | 5.4% | C12* (TGT→TGA) | chaC → | cation transport regulator |
| JC JC | 1,293,006 | IS5 (+) +3 bp | 45.6% | intergenic (‑84/‑519) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,009 | IS2 (–) +5 bp | 31.0% | intergenic (‑87/‑514) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,032 | IS1 (+) +9 bp | 38.3% | intergenic (‑110/‑487) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,297,267 | A→G | 5.2% | V285V (GTT→GTC) ‡ | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,297,268 | A→T | 5.8% | V285D (GTT→GAT) ‡ | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,311,830 | A→G | 6.4% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 5.6% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,324,837 | A→C | 6.5% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 5.6% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 5.9% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,346,957 | G→T | 5.4% | intergenic (+57/+21) | ymiB → / ← rnb | uncharacterized protein/ribonuclease II |
| RA | 1,354,227 | T→G | 5.2% | T98P (ACC→CCC) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,388,283 | C→T | 6.3% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 6.4% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 6.9% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,413,964 | C→T | 7.2% | intergenic (‑37/+20) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,413,966 | T→A | 7.3% | intergenic (‑39/+18) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,413,968 | A→G | 7.1% | intergenic (‑41/+16) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,441,833 | G→C | 6.1% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,835 | A→T | 5.2% | intergenic (‑92/+19) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 5.4% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,443,803 | G→A | 6.0% | P251P (CCG→CCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,443,804 | T→C | 6.0% | W252R (TGG→CGG) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,449,050 | T→A | 5.6% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,449,799 | C→G | 7.7% | T517T (ACG→ACC) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,802 | A→G | 7.7% | A516A (GCT→GCC) ‡ | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,803 | G→C | 7.5% | A516G (GCT→GGT) ‡ | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,804 | C→T | 7.8% | A516T (GCT→ACT) ‡ | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,807 | C→G | 7.8% | G515R (GGT→CGT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,457,530 | G→T | 5.2% | V12L (GTA→TTA) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,976 | A→T | 5.6% | G160G (GGA→GGT) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,979 | A→T | 5.7% | E161D (GAA→GAT) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,981 | G→C | 5.6% | S162T (AGT→ACT) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,983 | A→T | 5.8% | I163F (ATC→TTC) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,457,986 | A→T | 5.9% | T164S (ACC→TCC) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,466,138 | G→A | 6.1% | pseudogene (747/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,144 | G→T | 9.0% | pseudogene (753/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,336 | C→G | 9.2% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,504 | A→G | 7.6% | pseudogene (1113/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,488,050 | T→C | 5.7% | intergenic (+15/‑182) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,488,051 | G→A | 5.7% | intergenic (+16/‑181) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,488,055 | C→A | 6.5% | intergenic (+20/‑177) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,488,057 | C→G | 5.5% | intergenic (+22/‑175) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,488,059 | T→G | 5.5% | intergenic (+24/‑173) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,488,063 | T→C | 5.8% | intergenic (+28/‑169) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,488,064 | G→A | 5.4% | intergenic (+29/‑168) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,504,884 | T→C | 5.0% | intergenic (+19/+21) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,888 | T→G | 5.1% | intergenic (+23/+17) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,889 | C→A | 5.1% | intergenic (+24/+16) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,893 | G→A | 5.1% | intergenic (+28/+12) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,517,481 | C→G | 5.0% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 5.8% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,530,496 | G→T | 5.9% | intergenic (+92/‑90) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,552,191 | C→A | 24.4% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,568,915 | G→A | 9.8% | intergenic (‑92/+39) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,917 | A→T | 11.1% | intergenic (‑94/+37) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,919 | T→C | 9.6% | intergenic (‑96/+35) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,579,563 | G→T | 6.4% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 6.0% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 6.1% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 6.1% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,590,599 | A→G | 8.1% | intergenic (‑63/+255) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,590,601 | G→C | 8.5% | intergenic (‑65/+253) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,590,602 | C→G | 8.5% | intergenic (‑66/+252) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,590,603 | G→C | 8.9% | intergenic (‑67/+251) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,590,605 | C→T | 10.0% | intergenic (‑69/+249) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,602,236 | A→T | 6.7% | Q249H (CAA→CAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,602,239 | A→T | 6.7% | K250N (AAA→AAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,602,242 | A→T | 6.5% | L251F (TTA→TTT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,620,224 | C→G | 5.8% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 5.7% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,643,110 | T→A | 5.9% | K44N (AAA→AAT) ‡ | quuQ ← | Qin prophage; putative antitermination protein Q |
| RA | 1,643,111 | T→G | 5.7% | K44T (AAA→ACA) ‡ | quuQ ← | Qin prophage; putative antitermination protein Q |
| RA | 1,643,116 | C→A | 6.0% | Q42H (CAG→CAT) ‡ | quuQ ← | Qin prophage; putative antitermination protein Q |
| RA | 1,643,117 | T→A | 6.1% | Q42L (CAG→CTG) ‡ | quuQ ← | Qin prophage; putative antitermination protein Q |
| RA | 1,650,147 | G→A | 8.7% | pseudogene (70/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
| RA | 1,650,148 | T→C | 9.5% | pseudogene (71/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
| RA | 1,660,194 | A→C | 6.5% | K709T (AAG→ACG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,198 | T→A | 6.6% | A710A (GCT→GCA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,200 | C→G | 7.4% | A711G (GCC→GGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,202 | T→A | 6.2% | C712S (TGC→AGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,206 | G→T | 8.1% | R713L (CGT→CTT) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,666,470 | C→A | 5.1% | L386I (CTA→ATA) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,674,171 | Δ1 bp | 6.3% | coding (259/1035 nt) | tqsA → | pheromone AI‑2 transporter |
| RA | 1,674,177 | G→T | 6.2% | E89* (GAG→TAG) ‡ | tqsA → | pheromone AI‑2 transporter |
| RA | 1,674,178 | A→C | 6.2% | E89A (GAG→GCG) ‡ | tqsA → | pheromone AI‑2 transporter |
| RA | 1,679,644 | A→T | 5.3% | M30L (ATG→TTG) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,681,622 | T→A | 5.5% | L216Q (CTG→CAG) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| RA | 1,699,865 | C→G | 5.1% | P171A (CCG→GCG) | malX → | maltose and glucose‑specific PTS enzyme IIB component and IIC component |
| RA | 1,703,251 | A→T | 5.4% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 5.4% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,707,028 | T→G | 8.0% | V37G (GTA→GGA) ‡ | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,707,029 | A→G | 7.6% | V37V (GTA→GTG) ‡ | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,707,030 | C→T | 6.7% | P38S (CCC→TCC) ‡ | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,707,031 | C→A | 6.8% | P38H (CCC→CAC) ‡ | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,720,364 | G→T | 9.0% | intergenic (+21/+26) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,720,366 | T→A | 9.6% | intergenic (+23/+24) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,720,367 | A→C | 5.7% | intergenic (+24/+23) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,724,279 | T→A | 6.6% | D126V (GAT→GTT) ‡ | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,280 | C→A | 6.6% | D126Y (GAT→TAT) ‡ | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,282 | G→C | 6.8% | T125S (ACC→AGC) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,285 | G→C | 6.7% | A124G (GCT→GGT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,287 | T→G | 8.0% | K123N (AAA→AAC) ‡ | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,288 | T→A | 6.7% | K123I (AAA→ATA) ‡ | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,743,155 | C→G | 9.2% | D30H (GAC→CAC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,157 | G→A | 9.9% | P29L (CCC→CTC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,160 | A→T | 9.5% | L28* (TTA→TAA) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,163 | T→C | 9.9% | E27G (GAG→GGG) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,165 | C→G | 9.7% | V26V (GTG→GTC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,757,688 | T→A | 5.5% | intergenic (+31/+33) | lpp → / ← ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| RA | 1,764,687 | T→C | 8.5% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 8.3% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 9.2% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 8.4% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 8.0% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,789,497 | T→G | 6.7% | intergenic (+16/‑116) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,789,498 | G→T | 6.3% | intergenic (+17/‑115) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,789,499 | A→C | 7.7% | intergenic (+18/‑114) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,789,500 | C→A | 6.9% | intergenic (+19/‑113) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,790,787 | C→T | 5.6% | S153N (AGC→AAC) | ydiU ← | UPF0061 family protein |
| RA | 1,795,227 | A→T | 9.5% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 9.5% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 9.4% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,799,370 | Δ1 bp | 6.0% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 6.0% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,807,316 | G→A | 7.4% | intergenic (+17/‑84) | pfkB → / → ydiZ | 6‑phosphofructokinase II/uncharacterized protein |
| RA | 1,807,317 | C→T | 7.5% | intergenic (+18/‑83) | pfkB → / → ydiZ | 6‑phosphofructokinase II/uncharacterized protein |
| RA | 1,807,318 | A→G | 7.4% | intergenic (+19/‑82) | pfkB → / → ydiZ | 6‑phosphofructokinase II/uncharacterized protein |
| RA | 1,807,319 | T→C | 7.5% | intergenic (+20/‑81) | pfkB → / → ydiZ | 6‑phosphofructokinase II/uncharacterized protein |
| RA | 1,816,192 | G→A | 6.5% | intergenic (+64/+194) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,816,193 | C→A | 5.2% | intergenic (+65/+193) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,822,071 | G→A | 9.3% | I62I (ATC→ATT) ‡ | osmE ← | osmotically‑inducible lipoprotein |
| RA | 1,822,072 | A→T | 9.4% | I62N (ATC→AAC) ‡ | osmE ← | osmotically‑inducible lipoprotein |
| RA | 1,822,073 | T→C | 9.5% | I62V (ATC→GTC) ‡ | osmE ← | osmotically‑inducible lipoprotein |
| RA | 1,825,939 | T→A | 6.5% | intergenic (‑314/+16) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,830,060 | G→C | 5.3% | R236G (CGC→GGC) | astA ← | arginine succinyltransferase |
| RA | 1,830,061 | G→T | 5.3% | A235A (GCC→GCA) | astA ← | arginine succinyltransferase |
| RA | 1,864,758 | G→A | 5.6% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 5.4% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,889,916 | C→T | 5.1% | intergenic (‑170/+35) | fadD ← / ← yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
| RA | 1,889,917 | C→G | 5.2% | intergenic (‑171/+34) | fadD ← / ← yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
| RA | 1,889,918 | A→G | 5.2% | intergenic (‑172/+33) | fadD ← / ← yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
| RA | 1,929,012 | C→T | 9.3% | intergenic (‑173/+36) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,016 | A→G | 8.2% | intergenic (‑177/+32) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,018 | A→T | 7.8% | intergenic (‑179/+30) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,020 | T→A | 8.3% | intergenic (‑181/+28) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,022 | A→T | 8.3% | intergenic (‑183/+26) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,024 | C→T | 8.2% | intergenic (‑185/+24) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,028 | A→G | 8.1% | intergenic (‑189/+20) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,932,095 | T→A | 6.2% | intergenic (+36/+20) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,944,234 | A→C | 6.2% | intergenic (+35/+112) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,944,240 | T→G | 7.1% | intergenic (+41/+106) | znuB → / ← ruvB | zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,982,500 | T→C | 5.3% | intergenic (‑113/+54) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,985,112 | C→G | 6.8% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,857 | C→T | 6.8% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 6.3% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 6.4% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 6.9% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,990,922 | C→T | 8.9% | intergenic (+30/+32) | tyrP → / ← yecA | tyrosine transporter/UPF0149 family protein |
| RA | 1,990,926 | A→C | 9.0% | intergenic (+34/+28) | tyrP → / ← yecA | tyrosine transporter/UPF0149 family protein |
| RA | 1,990,927 | A→G | 9.1% | intergenic (+35/+27) | tyrP → / ← yecA | tyrosine transporter/UPF0149 family protein |
| RA | 1,990,932 | C→T | 9.0% | intergenic (+40/+22) | tyrP → / ← yecA | tyrosine transporter/UPF0149 family protein |
| RA | 1,990,933 | G→T | 8.5% | intergenic (+41/+21) | tyrP → / ← yecA | tyrosine transporter/UPF0149 family protein |
| RA | 1,990,937 | A→G | 9.6% | intergenic (+45/+17) | tyrP → / ← yecA | tyrosine transporter/UPF0149 family protein |
| RA | 1,999,231 | T→A | 8.7% | T84S (ACT→TCT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,044,721 | G→A | 6.2% | intergenic (+97/‑217) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,725 | T→A | 5.9% | intergenic (+101/‑213) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,727 | T→A | 6.1% | intergenic (+103/‑211) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,729 | T→A | 5.8% | intergenic (+105/‑209) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,733 | T→C | 6.0% | intergenic (+109/‑205) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,059,946 | T→A | 5.1% | intergenic (+20/+18) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,948 | T→A | 5.2% | intergenic (+22/+16) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,079,004 | G→C | 5.7% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,081,688 | A→T | 7.7% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,085,662 | C→T | 5.8% | intergenic (‑137/+42) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,085,664 | A→G | 6.0% | intergenic (‑139/+40) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,085,669 | T→A | 5.6% | intergenic (‑144/+35) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,085,670 | T→A | 6.6% | intergenic (‑145/+34) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,085,675 | C→T | 6.4% | intergenic (‑150/+29) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,085,677 | A→G | 6.4% | intergenic (‑152/+27) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,115,847 | G→T | 7.7% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 6.8% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 7.4% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,121,583 | Δ1 bp | 6.2% | intergenic (‑29/+26) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,586 | G→C | 6.9% | intergenic (‑32/+23) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,588:1 | +C | 6.5% | intergenic (‑34/+21) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,139,709 | G→A | 6.6% | intergenic (+224/+50) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,710 | C→A | 5.9% | intergenic (+225/+49) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,716 | T→G | 6.4% | intergenic (+231/+43) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,718 | T→A | 6.4% | intergenic (+233/+41) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,720 | C→A | 6.5% | intergenic (+235/+39) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,726 | T→G | 5.5% | intergenic (+241/+33) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,727 | T→C | 5.5% | intergenic (+242/+32) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,142,505 | G→C | 5.3% | R148R (CGC→CGG) | udk ← | uridine/cytidine kinase |
| RA | 2,153,396 | C→A | 6.7% | noncoding (88/143 nt) V5F (GTC→TTC) |
sibA → ibsA ← |
sRNA antisense regulator of toxic IbsA protein toxic membrane protein |
| RA | 2,153,398 | T→C | 5.9% | noncoding (90/143 nt) H4R (CAC→CGC) ‡ |
sibA → ibsA ← |
sRNA antisense regulator of toxic IbsA protein toxic membrane protein |
| RA | 2,153,399 | G→A | 5.8% | noncoding (91/143 nt) H4Y (CAC→TAC) ‡ |
sibA → ibsA ← |
sRNA antisense regulator of toxic IbsA protein toxic membrane protein |
| RA | 2,153,401 | T→G | 5.6% | noncoding (93/143 nt) K3T (AAG→ACG) |
sibA → ibsA ← |
sRNA antisense regulator of toxic IbsA protein toxic membrane protein |
| RA | 2,153,763 | T→C | 6.4% | noncoding (120/136 nt) | sibB → | sRNA antisense regulator of toxic IbsB protein |
| RA | 2,153,766 | T→G | 7.0% | noncoding (123/136 nt) | sibB → | sRNA antisense regulator of toxic IbsB protein |
| RA | 2,153,767 | C→A | 6.2% | noncoding (124/136 nt) | sibB → | sRNA antisense regulator of toxic IbsB protein |
| RA | 2,153,770 | G→A | 6.6% | noncoding (127/136 nt) | sibB → | sRNA antisense regulator of toxic IbsB protein |
| RA | 2,154,604 | C→G | 5.4% | R197G (CGG→GGG) | mdtA → | multidrug efflux system, subunit A |
| RA | 2,173,151 | C→T | 5.5% | pseudogene (212/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,153 | A→T | 5.9% | pseudogene (210/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,155 | A→G | 5.5% | pseudogene (208/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,252,810 | T→G | 5.5% | intergenic (+22/+85) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,812 | A→T | 5.1% | intergenic (+24/+83) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,814 | C→A | 5.2% | intergenic (+26/+81) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,254,348 | A→C | 5.2% | V280G (GTT→GGT) | rihB ← | ribonucleoside hydrolase 2 |
| RA | 2,259,549 | A→T | 6.4% | intergenic (‑253/+170) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,550 | A→T | 7.0% | intergenic (‑254/+169) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,553 | A→T | 6.5% | intergenic (‑257/+166) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,554 | A→T | 7.0% | intergenic (‑258/+165) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,263,235 | C→T | 6.2% | W87* (TGG→TGA) ‡ | fruB ← | fused fructose‑specific PTS enzymes: IIA component/HPr component |
| RA | 2,263,236 | C→G | 6.4% | W87S (TGG→TCG) ‡ | fruB ← | fused fructose‑specific PTS enzymes: IIA component/HPr component |
| RA | 2,263,237 | A→G | 6.6% | W87R (TGG→CGG) ‡ | fruB ← | fused fructose‑specific PTS enzymes: IIA component/HPr component |
| RA | 2,270,602 | T→C | 8.5% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 8.5% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,279,422 | A→G | 5.3% | A113A (GCT→GCC) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,282,449 | A→G | 5.7% | intergenic (+57/‑68) | yejH → / → rplY | putative ATP‑dependent DNA or RNA helicase/50S ribosomal subunit protein L25 |
| RA | 2,282,452 | C→T | 5.5% | intergenic (+60/‑65) | yejH → / → rplY | putative ATP‑dependent DNA or RNA helicase/50S ribosomal subunit protein L25 |
| RA | 2,286,311 | C→G | 5.8% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 6.6% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 5.7% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,290,448 | A→G | 5.1% | intergenic (‑268/‑52) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,290,449 | C→G | 5.1% | intergenic (‑269/‑51) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,290,450 | C→T | 5.1% | intergenic (‑270/‑50) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,319,581 | A→G | 9.6% | V99A (GTG→GCG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,582 | C→G | 9.5% | V99L (GTG→CTG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,585 | C→G | 10.1% | D98H (GAT→CAT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,586 | C→T | 9.5% | A97A (GCG→GCA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,347,167 | G→A | 5.4% | intergenic (+17/‑217) | nrdA → / → nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| RA | 2,347,168 | C→A | 5.1% | intergenic (+18/‑216) | nrdA → / → nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| RA | 2,347,174 | A→T | 5.1% | intergenic (+24/‑210) | nrdA → / → nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| RA | 2,347,181 | T→G | 5.1% | intergenic (+31/‑203) | nrdA → / → nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| RA | 2,347,182 | T→C | 5.2% | intergenic (+32/‑202) | nrdA → / → nrdB | ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| RA | 2,356,734 | G→C | 6.7% | intergenic (+23/‑170) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,737 | T→C | 7.0% | intergenic (+26/‑167) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,738 | G→A | 6.9% | intergenic (+27/‑166) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,741 | G→C | 7.0% | intergenic (+30/‑163) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,357,665 | G→A | 7.6% | G254G (GGG→GGA) | yfaD → | transposase_31 family protein |
| RA | 2,364,995 | T→G | 8.9% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 9.4% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,366,010:1 | +T | 5.5% | coding (83/1140 nt) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,366,015 | Δ1 bp | 5.4% | coding (88/1140 nt) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,391,414 | C→G | 6.5% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,391,417 | C→G | 7.3% | W30S (TGG→TCG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,399,828 | T→G | 5.4% | H113P (CAT→CCT) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,399,878 | C→G | 5.0% | M96I (ATG→ATC) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,407,890 | Δ1 bp | 5.6% | coding (330/1218 nt) | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,898 | A→C | 7.1% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 7.3% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,413,009 | T→A | 5.5% | K42* (AAG→TAG) | yfbV ← | UPF0208 family inner membrane protein |
| RA | 2,428,039 | A→T | 5.8% | intergenic (‑248/+18) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,438,862 | A→G | 5.1% | T305A (ACG→GCG) | flk → | putative flagella assembly protein |
| RA | 2,449,615 | C→G | 5.2% | G145G (GGG→GGC) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,616 | C→G | 5.8% | G145A (GGG→GCG) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,624 | Δ1 bp | 5.2% | coding (426/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,462,677 | A→T | 6.8% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 6.9% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 6.6% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,464,228 | C→A | 7.7% | intergenic (+158/+24) | yfdF → / ← mlaA | uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,470,480 | A→T | 6.0% | intergenic (+18/‑335) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| RA | 2,470,482 | C→A | 7.9% | intergenic (+20/‑333) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| RA | 2,470,483 | A→T | 5.3% | intergenic (+21/‑332) | gtrS → / → tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| RA | 2,474,878 | T→C | 5.3% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,477,014 | C→A | 8.6% | A206S (GCA→TCA) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,503,518 | G→T | 8.7% | A323D (GCC→GAC) ‡ | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,519 | C→T | 7.0% | A323T (GCC→ACC) ‡ | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,522 | A→G | 7.1% | Y322H (TAT→CAT) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,523 | A→C | 7.6% | R321R (CGT→CGG) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,512,728 | C→A | 5.7% | intergenic (‑22/‑314) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,521,346 | A→T | 5.0% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,560,326 | A→G | 5.2% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 5.7% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,592,990 | A→C | 8.6% | intergenic (+28/+82) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,593,004 | C→T | 7.6% | intergenic (+42/+68) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,611,517 | A→G | 5.0% | S21G (AGC→GGC) | hyfJ → | putative processing element hydrogenase 4 |
| RA | 2,620,216 | C→T | 7.5% | intergenic (‑56/+30) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,218 | T→A | 7.1% | intergenic (‑58/+28) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,220 | A→G | 7.1% | intergenic (‑60/+26) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,648,446 | Δ1 bp | 7.3% | coding (3842/4962 nt) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,452 | C→A | 8.5% | G1279V (GGT→GTT) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,455 | C→G | 8.3% | R1278P (CGG→CCG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,458 | T→G | 9.6% | N1277T (AAC→ACC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,463:1 | +A | 8.3% | coding (3825/4962 nt) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,654,142 | T→A | 5.6% | noncoding (288/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,654,143 | T→A | 5.1% | noncoding (289/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,673,783 | G→A | 6.0% | intergenic (+15/+33) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,784 | C→A | 7.9% | intergenic (+16/+32) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,681,967 | T→C | 6.4% | Y260C (TAC→TGC) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,681,969 | C→G | 6.3% | Q259H (CAG→CAC) ‡ | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,681,971 | G→A | 6.2% | Q259* (CAG→TAG) ‡ | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,700,862 | G→A | 5.5% | P46L (CCG→CTG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,863 | G→C | 5.3% | P46A (CCG→GCG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,865 | T→A | 5.1% | Q45L (CAG→CTG) | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,867 | G→C | 5.8% | H44Q (CAC→CAG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,868 | T→C | 5.8% | H44R (CAC→CGC) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,704,304 | A→G | 5.5% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 5.4% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 5.6% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,724,097 | T→A | 5.2% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 5.2% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,413 | A→T | 5.3% | S96C (AGC→TGC) | yfiM → | putative lipoprotein |
| RA | 2,725,837 | T→A | 5.1% | intergenic (‑91/+232) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,731,580 | C→T | 5.3% | intergenic (‑423/+20) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,581 | G→T | 5.0% | intergenic (‑424/+19) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,582 | A→C | 5.6% | intergenic (‑425/+18) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,583 | A→G | 5.1% | intergenic (‑426/+17) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,733,927 | G→T | 5.6% | P83T (CCA→ACA) | clpB ← | protein disaggregation chaperone |
| RA | 2,742,796 | A→C | 5.1% | E138D (GAA→GAC) | yfiN → | putative membrane‑anchored diguanylate cyclase |
| RA | 2,744,282 | G→T | 5.2% | S83R (AGC→AGA) | rplS ← | 50S ribosomal subunit protein L19 |
| RA | 2,756,017 | A→C | 6.3% | intergenic (+639/‑142) | smpB → / → intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| RA | 2,768,609 | T→C | 9.5% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 9.8% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 9.0% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 9.4% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,800,515 | C→A | 5.0% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 5.4% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,801,056 | A→T | 5.7% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,807,091 | T→C | 7.7% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,093 | A→T | 7.6% | intergenic (+19/‑39) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 7.6% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,815,730 | C→T | 23.8% | S237N (AGC→AAC) | gshA ← | glutamate‑cysteine ligase |
| RA | 2,818,049 | T→A | 7.6% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,822,679 | A→C | 6.3% | intergenic (‑40/+29) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,828,533 | A→T | 5.1% | intergenic (+17/‑88) | srlD → / → srlM | sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator |
| RA | 2,828,537 | A→T | 5.8% | intergenic (+21/‑84) | srlD → / → srlM | sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator |
| RA | 2,838,222 | A→T | 5.9% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,838,231 | A→T | 5.7% | intergenic (‑126/+23) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,839,321 | C→G | 7.8% | intergenic (‑57/‑203) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,323 | T→A | 7.2% | intergenic (‑59/‑201) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,324 | T→A | 7.2% | intergenic (‑60/‑200) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,326 | C→G | 7.7% | intergenic (‑62/‑198) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,894,852 | T→G | 5.2% | intergenic (+81/+67) | ygcP → / ← ygcQ | putative antiterminator regulatory protein/putative flavoprotein |
| RA | 2,911,007 | G→A | 7.2% | R29C (CGT→TGT) | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,008 | A→T | 6.6% | H28Q (CAT→CAA) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,009 | T→C | 7.2% | H28R (CAT→CGT) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,918,017 | C→T | 5.8% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,019 | G→T | 5.8% | intergenic (+206/+26) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 6.4% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,022 | A→G | 5.9% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,931,836 | T→G | 5.4% | intergenic (+26/+29) | ygdG → / ← fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase |
| RA | 2,961,248 | A→T | 6.1% | L394Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,961,251 | A→T | 6.6% | L393Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,976,754 | T→G | 5.9% | R52R (CGT→CGG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 2,976,758 | C→T | 6.4% | L54L (CTG→TTG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 2,980,742 | A→G | 5.4% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,744 | A→T | 5.7% | intergenic (‑109/+20) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,746 | C→T | 5.6% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,987,103 | C→T | 5.7% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 5.7% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 5.6% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,020,510 | G→T | 6.9% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 7.8% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 6.5% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,045,124 | T→C | 7.0% | intergenic (+23/+34) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,045,126 | C→A | 6.8% | intergenic (+25/+32) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,045,127 | T→G | 7.9% | intergenic (+26/+31) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,045,129 | G→A | 7.4% | intergenic (+28/+29) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,066,308 | A→T | 6.1% | I289N (ATT→AAT) ‡ | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,309 | T→A | 6.5% | I289F (ATT→TTT) ‡ | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,310 | A→T | 6.5% | H288Q (CAT→CAA) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,079,615 | C→T | 5.9% | intergenic (‑285/+29) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,616 | G→T | 5.7% | intergenic (‑286/+28) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,617 | A→C | 5.7% | intergenic (‑287/+27) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,618 | A→G | 5.7% | intergenic (‑288/+26) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,140,351 | C→T | 5.8% | R150H (CGC→CAC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,352 | G→C | 5.8% | R150G (CGC→GGC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,353 | A→G | 5.9% | R149R (CGT→CGC) | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,156,590 | C→A | 6.9% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 7.0% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,171,857 | A→T | 5.3% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,181,603 | C→T | 5.3% | intergenic (+22/+16) | ygiC → / ← ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,183,345:1 | +T | 5.8% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 5.7% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,202,009 | A→T | 6.7% | Q40L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,685 | A→G | 5.6% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,233,153 | A→T | 5.7% | K497* (AAA→TAA) ‡ | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,233,154 | A→T | 5.1% | K497I (AAA→ATA) ‡ | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,233,155 | A→T | 5.2% | K497N (AAA→AAT) ‡ | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,233,708 | A→G | 6.9% | intergenic (+25/+20) | fadH → / ← higA | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked/antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,233,710 | C→T | 5.9% | intergenic (+27/+18) | fadH → / ← higA | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked/antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,241,781 | C→T | 5.6% | intergenic (‑37/+46) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,786 | C→T | 5.6% | intergenic (‑42/+41) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,788 | T→A | 5.4% | intergenic (‑44/+39) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,790 | A→G | 5.4% | intergenic (‑46/+37) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,795 | A→G | 5.6% | intergenic (‑51/+32) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,250,990 | A→T | 5.1% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,256,441 | T→G | 9.0% | T71P (ACG→CCG) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,442 | G→C | 8.1% | G70G (GGC→GGG) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,443 | C→A | 8.1% | G70V (GGC→GTC) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,450 | C→T | 7.6% | V68I (GTT→ATT) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,263,500 | G→A | 9.5% | P54L (CCG→CTG) ‡ | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,501 | G→C | 9.8% | P54A (CCG→GCG) ‡ | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,502 | T→C | 9.2% | A53A (GCA→GCG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,281,719 | C→A | 5.6% | intergenic (+94/‑257) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,282,927 | A→G | 5.2% | I318V (ATC→GTC) ‡ | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,282,928 | T→A | 5.3% | I318N (ATC→AAC) ‡ | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,282,929 | C→T | 5.3% | I318I (ATC→ATT) ‡ | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,288,032 | C→A | 6.0% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 5.9% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,316,740 | A→G | 7.8% | S263P (TCT→CCT) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,334,704 | G→C | 6.5% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,368,982 | G→C | 5.3% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,370,703 | G→A | 6.1% | P112S (CCG→TCG) | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,370,704 | A→C | 7.6% | R111R (CGT→CGG) | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,370,708 | G→C | 6.5% | P110R (CCG→CGG) ‡ | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,370,709 | G→C | 6.5% | P110A (CCG→GCG) ‡ | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,370,713 | G→T | 7.2% | D108E (GAC→GAA) ‡ | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,370,714 | T→C | 6.7% | D108G (GAC→GGC) ‡ | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,392,189 | T→G | 5.1% | intergenic (‑161/+269) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,392,320 | A→C | 5.5% | intergenic (‑292/+138) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,397,961 | T→G | 5.6% | S140R (AGC→CGC) | yhdE ← | dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase |
| RA | 3,397,965 | G→T | 5.6% | V138V (GTC→GTA) ‡ | yhdE ← | dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase |
| RA | 3,397,967 | C→T | 5.6% | V138I (GTC→ATC) ‡ | yhdE ← | dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase |
| RA | 3,397,968 | A→G | 5.6% | Y137Y (TAT→TAC) ‡ | yhdE ← | dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase |
| RA | 3,397,970 | A→C | 6.2% | Y137D (TAT→GAT) ‡ | yhdE ← | dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase |
| RA | 3,397,974 | C→A | 5.4% | A135A (GCG→GCT) | yhdE ← | dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase |
| RA | 3,430,942 | A→C | 5.5% | F158L (TTT→TTG) | tsaC ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine‑dependent ADP‑forming ATPase |
| RA | 3,448,276 | T→A | 6.3% | intergenic (‑127/+38) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,458,110 | C→A | 100% | T578T (ACC→ACA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,482,325 | G→A | 100% | R346H (CGC→CAC) | yheS → | ABC‑F family protein predicted regulatory ATPase |
| RA | 3,510,359 | C→A | 5.5% | L206F (TTG→TTT) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
| RA | 3,510,363 | A→G | 6.9% | V205A (GTT→GCT) ‡ | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
| RA | 3,510,364 | C→T | 5.8% | V205I (GTT→ATT) ‡ | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
| RA | 3,510,368 | T→G | 6.5% | G203G (GGA→GGC) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
| RA | 3,528,479 | T→G | 6.6% | Y671D (TAC→GAC) ‡ | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| RA | 3,528,480 | A→T | 7.1% | Y671F (TAC→TTC) ‡ | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| RA | 3,528,481 | C→A | 6.3% | Y671* (TAC→TAA) ‡ | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| RA | 3,530,671 | A→C | 5.1% | intergenic (+19/+44) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,672 | G→C | 5.5% | intergenic (+20/+43) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,673 | G→C | 5.8% | intergenic (+21/+42) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,674 | G→T | 6.1% | intergenic (+22/+41) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,539,815 | A→T | 6.6% | intergenic (+109/‑348) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,816 | T→A | 6.5% | intergenic (+110/‑347) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,817 | A→T | 5.9% | intergenic (+111/‑346) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,566,218 | C→G | 5.4% | G122R (GGT→CGT) | glgP ← | glycogen phosphorylase |
| RA | 3,570,878 | A→G | 5.1% | W148R (TGG→CGG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,880 | G→C | 5.2% | P147R (CCG→CGG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,884 | T→C | 5.2% | T146A (ACG→GCG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,885 | G→A | 5.1% | R145R (CGC→CGT) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,889 | G→C | 5.4% | P144R (CCG→CGG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,891 | C→T | 5.3% | P143P (CCG→CCA) | glgX ← | glycogen debranching enzyme |
| RA | 3,599,756 | A→G | 5.5% | intergenic (‑98/+173) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,599,759 | C→T | 5.4% | intergenic (‑101/+170) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,599,760 | T→G | 6.0% | intergenic (‑102/+169) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,600,988 | T→A | 6.6% | intergenic (‑205/+40) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,600,990 | C→T | 6.7% | intergenic (‑207/+38) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,600,993 | A→G | 6.5% | intergenic (‑210/+35) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,600,994 | A→T | 6.7% | intergenic (‑211/+34) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,600,995 | C→T | 6.2% | intergenic (‑212/+33) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,600,998 | A→G | 6.2% | intergenic (‑215/+30) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,601,000 | T→A | 6.1% | intergenic (‑217/+28) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/putative ABC transporter permease |
| RA | 3,614,830 | G→A | 8.1% | Q388Q (CAG→CAA) | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,614,831 | A→T | 7.9% | I389F (ATT→TTT) ‡ | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,614,832 | T→C | 8.2% | I389T (ATT→ACT) ‡ | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,616,399 | T→G | 5.9% | V73G (GTG→GGG) | nikC → | nickel ABC transporter permease |
| RA | 3,648,128 | G→T | 5.0% | noncoding (66/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,129 | C→T | 5.1% | noncoding (67/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,130 | A→T | 6.4% | noncoding (68/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,657,599 | T→A | 7.4% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 7.3% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 8.1% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,702,835 | G→A | 5.9% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 6.0% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 6.3% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,728,215 | T→A | 5.9% | K386I (AAA→ATA) | xylB ← | xylulokinase |
| RA | 3,728,217 | A→T | 5.4% | I385I (ATT→ATA) ‡ | xylB ← | xylulokinase |
| RA | 3,728,219 | T→A | 5.5% | I385F (ATT→TTT) ‡ | xylB ← | xylulokinase |
| RA | 3,748,108 | T→A | 6.1% | F342Y (TTC→TAC) | lyxK → | L‑xylulose kinase |
| RA | 3,748,110 | C→A | 6.2% | L343M (CTG→ATG) ‡ | lyxK → | L‑xylulose kinase |
| RA | 3,748,111 | T→G | 5.4% | L343R (CTG→CGG) ‡ | lyxK → | L‑xylulose kinase |
| RA | 3,748,113 | T→A | 6.0% | Y344N (TAC→AAC) | lyxK → | L‑xylulose kinase |
| RA | 3,757,939 | Δ1 bp | 5.2% | intergenic (‑112/+78) | yiaY ← / ← selB | L‑threonine dehydrogenase/selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,757,942 | C→A | 7.3% | intergenic (‑115/+75) | yiaY ← / ← selB | L‑threonine dehydrogenase/selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,757,947:1 | +T | 5.1% | intergenic (‑120/+70) | yiaY ← / ← selB | L‑threonine dehydrogenase/selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,760,788 | C→G | 5.5% | A154A (GCG→GCC) | selA ← | selenocysteine synthase |
| RA | 3,760,792 | T→G | 6.3% | N153T (AAT→ACT) | selA ← | selenocysteine synthase |
| RA | 3,792,765 | C→T | 6.9% | intergenic (‑214/+61) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,766 | A→T | 6.0% | intergenic (‑215/+60) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,767 | A→T | 5.9% | intergenic (‑216/+59) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,768 | A→G | 6.2% | intergenic (‑217/+58) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,798,234 | A→T | 6.2% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 7.1% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,809,354 | A→G | 6.5% | E272G (GAA→GGA) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,809,356 | C→A | 6.2% | R273S (CGC→AGC) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,809,359 | T→G | 6.3% | F274V (TTC→GTC) ‡ | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,809,361 | C→T | 5.8% | F274F (TTC→TTT) ‡ | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,880,374 | A→T | 5.6% | L283Q (CTG→CAG) ‡ | recF ← | gap repair protein |
| RA | 3,880,375 | G→T | 5.6% | L283M (CTG→ATG) ‡ | recF ← | gap repair protein |
| RA | 3,880,380 | A→C | 5.7% | L281* (TTA→TGA) ‡ | recF ← | gap repair protein |
| RA | 3,880,381 | A→T | 5.7% | L281I (TTA→ATA) ‡ | recF ← | gap repair protein |
| RA | 3,888,212 | Δ1 bp | 6.6% | intergenic (+20/‑223) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,219 | T→A | 6.4% | intergenic (+27/‑216) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,224:1 | +A | 6.6% | intergenic (+32/‑211) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,891,504 | T→A | 5.6% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.6% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,906,267 | G→T | 5.4% | H101N (CAT→AAT) | bglG ← | transcriptional antiterminator of the bgl operon |
| RA | 3,906,826 | T→C | 9.4% | intergenic (‑259/+27) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,828 | A→T | 9.0% | intergenic (‑261/+25) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,830 | G→A | 9.0% | intergenic (‑263/+23) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,918,291 | C→T | 7.2% | intergenic (‑26/+25) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,296 | C→T | 7.3% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,299 | A→G | 7.1% | intergenic (‑34/+17) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,304 | A→G | 7.2% | intergenic (‑39/+12) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,947,051 | A→C | 6.2% | intergenic (+19/+77) | trpT → / ← hdfR | tRNA‑Trp/flhDC operon transcriptional repressor |
| RA | 3,947,332 | A→T | 6.4% | A212A (GCT→GCA) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,947,335 | A→T | 7.0% | S211S (TCT→TCA) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,966,768 | G→T | 6.3% | E118* (GAA→TAA) ‡ | rho → | transcription termination factor |
| RA | 3,966,769 | A→T | 6.3% | E118V (GAA→GTA) ‡ | rho → | transcription termination factor |
| RA | 3,966,770 | A→C | 6.5% | E118D (GAA→GAC) ‡ | rho → | transcription termination factor |
| RA | 3,980,726 | G→A | 5.7% | intergenic (+30/‑161) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,727 | T→C | 5.7% | intergenic (+31/‑160) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,995,720 | G→C | 5.2% | P46P (CCG→CCC) | yigA → | DUF484 family protein |
| RA | 4,015,333 | A→T | 5.8% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,049,986 | G→T | 9.8% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 5.8% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,051,259 | G→T | 6.3% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 6.3% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,070,413 | T→G | 6.8% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,074,842 | C→T | 5.7% | H58H (CAC→CAT) | yihW → | putative transcriptional regulator for sulphoquinovose utilization |
| RA | 4,088,091 | G→C | 9.0% | intergenic (+34/+16) | yiiG → / ← frvR | DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain |
| RA | 4,092,780 | C→A | 5.2% | G15V (GGC→GTC) | frvA ← | putative enzyme IIA component of PTS |
| RA | 4,095,842 | A→C | 5.9% | G47G (GGT→GGG) | rhaA ← | L‑rhamnose isomerase |
| RA | 4,103,527 | T→A | 5.2% | intergenic (+31/+75) | yiiM → / ← cpxA | 6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,126,129 | A→T | 6.1% | S228T (TCC→ACC) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,126,130 | A→T | 6.6% | G227G (GGT→GGA) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,132,424 | T→A | 7.3% | intergenic (+157/‑192) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
| RA | 4,132,428 | T→A | 7.3% | intergenic (+161/‑188) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
| RA | 4,132,429 | T→A | 7.3% | intergenic (+162/‑187) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
| RA | 4,132,430 | T→A | 7.8% | intergenic (+163/‑186) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
| RA | 4,132,434 | T→A | 6.5% | intergenic (+167/‑182) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
| RA | 4,136,033 | G→A | 6.6% | intergenic (+18/‑75) | katG → / → yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| RA | 4,136,038 | T→C | 6.7% | intergenic (+23/‑70) | katG → / → yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| RA | 4,136,039 | T→A | 6.6% | intergenic (+24/‑69) | katG → / → yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| RA | 4,136,042 | T→A | 6.7% | intergenic (+27/‑66) | katG → / → yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| RA | 4,136,043 | G→A | 6.5% | intergenic (+28/‑65) | katG → / → yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| RA | 4,136,048 | T→C | 6.6% | intergenic (+33/‑60) | katG → / → yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| RA | 4,241,067 | C→T | 6.3% | S396S (TCG→TCA) | xylE ← | D‑xylose transporter |
| RA | 4,245,108 | T→G | 6.1% | intergenic (‑33/+121) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,110 | T→G | 6.2% | intergenic (‑35/+119) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,111 | C→A | 6.7% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,113 | C→A | 6.5% | intergenic (‑38/+116) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,262,250 | G→C | 5.4% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 6.5% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,281,677 | T→A | 5.2% | intergenic (+48/+106) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,281,678 | C→A | 5.8% | intergenic (+49/+105) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,281,679 | T→G | 5.4% | intergenic (+50/+104) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,281,680 | T→A | 5.3% | intergenic (+51/+103) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,296,060 | C→T | 40.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,294 | A→T | 9.0% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 8.9% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,314,233 | A→T | 5.1% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,317,977 | A→G | 5.1% | intergenic (‑82/+29) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,978 | A→C | 5.6% | intergenic (‑83/+28) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,984 | T→A | 5.1% | intergenic (‑89/+22) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,991 | G→T | 5.1% | intergenic (‑96/+15) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,992 | C→T | 5.4% | intergenic (‑97/+14) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,332,868 | G→T | 6.4% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 7.9% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,336,974 | A→T | 6.7% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,979 | A→C | 6.0% | M18R (ATG→AGG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,981 | C→G | 6.0% | L17L (CTG→CTC) ‡ | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,983 | G→T | 6.6% | L17M (CTG→ATG) ‡ | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,988 | A→T | 6.1% | V15D (GTC→GAC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,353,170 | G→A | 6.0% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 5.6% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 6.6% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 6.1% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,365,452 | G→T | 6.2% | intergenic (‑96/+20) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,365,453 | A→C | 7.4% | intergenic (‑97/+19) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,366,854 | T→G | 6.4% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 7.3% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,388,931 | T→G | 7.4% | D147A (GAC→GCC) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,390,401 | C→A | 7.2% | intergenic (‑41/+56) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,403 | A→G | 7.5% | intergenic (‑43/+54) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,404 | C→T | 7.4% | intergenic (‑44/+53) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,406 | T→G | 7.4% | intergenic (‑46/+51) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,407,947 | G→A | 5.3% | E432K (GAA→AAA) | rnr → | exoribonuclease R, RNase R |
| RA | 4,414,234 | G→C | 7.0% | intergenic (+43/‑41) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,240 | A→T | 6.6% | intergenic (+49/‑35) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,241 | C→A | 5.8% | intergenic (+50/‑34) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,242 | T→G | 6.7% | intergenic (+51/‑33) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,243 | A→T | 7.0% | intergenic (+52/‑32) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,249 | G→C | 6.6% | intergenic (+58/‑26) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,473,927 | C→A | 100% | A43S (GCC→TCC) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,510,334 | G→T | 6.3% | intergenic (+201/+356) | yjhV → / ← fecE | pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase |
| RA | 4,510,335 | C→G | 6.2% | intergenic (+202/+355) | yjhV → / ← fecE | pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase |
| RA | 4,510,336 | A→C | 6.6% | intergenic (+203/+354) | yjhV → / ← fecE | pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase |
| RA | 4,519,311 | A→G | 5.7% | intergenic (+87/+27) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,519,313 | C→A | 5.3% | intergenic (+89/+25) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,519,314 | T→G | 5.4% | intergenic (+90/+24) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,519,316 | C→T | 5.6% | intergenic (+92/+22) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,520,500 | Δ1 bp | 6.0% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 5.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,523,472 | A→C | 5.4% | F208C (TTC→TGC) | yjhG ← | putative dehydratase |
| RA | 4,551,422 | T→A | 6.3% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,591,498 | T→A | 8.9% | intergenic (‑219/‑159) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,591,499 | C→T | 8.8% | intergenic (‑220/‑158) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,591,500 | A→G | 9.2% | intergenic (‑221/‑157) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,591,501 | T→A | 10.0% | intergenic (‑222/‑156) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,608,604 | C→G | 5.1% | I140M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,608,607 | C→G | 5.7% | I141M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,612,329 | A→G | 6.1% | intergenic (+40/‑82) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,330 | G→C | 6.5% | intergenic (+41/‑81) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,331 | C→T | 6.0% | intergenic (+42/‑80) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,627,180 | T→G | 5.4% | G423G (GGT→GGG) | radA → | DNA repair protein |
| RA | 4,627,810 | G→T | 14.5% | A166S (GCT→TCT) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| RA | 4,627,828 | C→A | 12.4% | P172T (CCG→ACG) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 448619 | 450690 | 2072 | 60 [59] | [59] 60 | [cyoC]–[cyoA] | [cyoC],cyoB,[cyoA] |
| * | * | ÷ | NC_000913 | 2403904 | 2404681 | 778 | 60 [59] | [59] 61 | nuoB–[nuoA] | nuoB,[nuoA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4421 | 111 (1.040) | 6 (0.060) | 6/268 | NT | 5.4% | coding (688/1287 nt) | thrC | L‑threonine synthase |
| ? | NC_000913 | = 4450 | 105 (1.020) | coding (717/1287 nt) | thrC | L‑threonine synthase | |||||
| * | ? | NC_000913 | = 193453 | 91 (0.850) | 5 (0.050) | 4/258 | NT | 5.3% | intergenic (+24/‑68) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | = 193478 | 93 (0.940) | intergenic (+49/‑43) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 211775 | 90 (0.840) | 5 (0.050) | 4/268 | NT | 5.3% | coding (2097/2142 nt) | ldcC | lysine decarboxylase 2, constitutive |
| ? | NC_000913 | = 211799 | 91 (0.890) | coding (2121/2142 nt) | ldcC | lysine decarboxylase 2, constitutive | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 6 (0.060) | 6/278 | NT | 17.1% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1293015 = | 29 (0.270) | intergenic (‑93/‑512) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 271017 = | NA (NA) | 7 (0.070) | 6/264 | NT | NA | noncoding (477/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 271039 = | NA (NA) | noncoding (499/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 4 (0.040) | 4/264 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 7 (0.070) | 6/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 6 (0.060) | 4/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 3 (0.030) | 3/258 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 7 (0.070) | 5/258 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 8 (0.080) | 6/264 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 4 (0.040) | 3/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 4 (0.040) | 3/260 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 4 (0.040) | 4/260 | NT | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 526459 = | NA (NA) | 4 (0.040) | 4/268 | NT | 100% | coding (3199/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 526482 = | 0 (0.000) | coding (3222/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 535514 | 94 (0.880) | 6 (0.060) | 6/254 | NT | 6.4% | coding (1599/1782 nt) | gcl | glyoxylate carboligase |
| ? | NC_000913 | = 535539 | 89 (0.910) | coding (1624/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | NC_000913 | = 552400 | 120 (1.130) | 6 (0.060) | 5/264 | NT | 5.0% | coding (195/1068 nt) | purK | N5‑carboxyaminoimidazole ribonucleotide synthase |
| ? | NC_000913 | = 552430 | 113 (1.120) | coding (165/1068 nt) | purK | N5‑carboxyaminoimidazole ribonucleotide synthase | |||||
| * | ? | NC_000913 | = 580768 | 77 (0.720) | 5 (0.050) | 5/246 | NT | 6.0% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 88 (0.930) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 696863 = | 26 (0.240) | 11 (0.110) +GAAGAAACAATC |
9/254 | NT | 17.0% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | = 697134 | 92 (0.860) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | 878637 = | 130 (1.220) | 9 (0.090) | 8/258 | NT | 7.3% | intergenic (+6/‑105) | bssR/yliI | repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase |
| ? | NC_000913 | 878662 = | 107 (1.080) | intergenic (+31/‑80) | bssR/yliI | repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase | |||||
| * | ? | NC_000913 | 1110890 = | 121 (1.140) | 6 (0.060) | 5/262 | NT | 5.3% | coding (28/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| ? | NC_000913 | 1110927 = | 102 (1.020) | coding (65/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist | |||||
| * | ? | NC_000913 | 1207790 = | 31 (0.290) | 51 (0.540) | 45/246 | NT | 59.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 42 (0.450) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 30 (0.280) | 50 (0.530) | 43/246 | NT | 59.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 42 (0.450) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1294420 = | NA (NA) | 3 (0.030) | 3/268 | NT | NA | intergenic (+276/+6) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog |
| ? | NC_000913 | 1294445 = | NA (NA) | noncoding (961/980 nt) | ISZ | repeat region | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 9 (0.090) | 6/266 | NT | 6.9% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 127 (1.190) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1456149 | 95 (0.890) | 6 (0.060) | 4/266 | NT | 6.0% | coding (225/498 nt) | paaD | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
| ? | NC_000913 | = 1456169 | 96 (0.940) | coding (245/498 nt) | paaD | ring 1,2‑phenylacetyl‑CoA epoxidase subunit | |||||
| * | ? | NC_000913 | 1463439 = | 123 (1.150) | 9 (0.090) | 5/264 | NT | 7.4% | intergenic (+1/‑100) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913 | 1463490 = | 109 (1.080) | intergenic (+52/‑49) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||
| * | ? | NC_000913 | 1510110 = | 97 (0.910) | 5 (0.050) | 4/264 | NT | 5.3% | coding (108/1407 nt) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| ? | NC_000913 | 1510142 = | 86 (0.850) | coding (140/1407 nt) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase | |||||
| * | ? | NC_000913 | 1611571 = | 70 (0.660) | 4 (0.040) | 3/270 | NT | 5.5% | coding (284/948 nt) | yneF | putative membrane‑bound diguanylate cyclase |
| ? | NC_000913 | 1611609 = | 69 (0.670) | coding (246/948 nt) | yneF | putative membrane‑bound diguanylate cyclase | |||||
| * | ? | NC_000913 | = 1953511 | 89 (0.830) | 6 (0.060) | 3/268 | NT | 6.1% | coding (70/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| ? | NC_000913 | = 1953539 | 100 (0.970) | coding (98/972 nt) | cmoB | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent | |||||
| * | ? | NC_000913 | = 2227439 | 109 (1.020) | 6 (0.060) | 4/270 | NT | 5.4% | pseudogene (1171/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| ? | NC_000913 | = 2227471 | 105 (1.010) | pseudogene (1139/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins | |||||
| * | ? | NC_000913 | 3108915 = | 80 (0.750) | 5 (0.050) | 4/272 | NT | 6.1% | coding (241/2136 nt) | speC | ornithine decarboxylase, constitutive |
| ? | NC_000913 | 3108959 = | 77 (0.740) | coding (197/2136 nt) | speC | ornithine decarboxylase, constitutive | |||||
| * | ? | NC_000913 | 3255217 = | NA (NA) | 5 (0.050) | 4/264 | NT | NA | noncoding (1/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3255247 = | NA (NA) | noncoding (31/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3277819 = | NA (NA) | 4 (0.040) | 4/262 | NT | NA | noncoding (1/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3277844 = | NA (NA) | noncoding (26/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3336923 = | NA (NA) | 3 (0.030) | 3/266 | NT | NA | noncoding (5/34 nt) | REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3336953 = | NA (NA) | intergenic (‑150/+10) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component | |||||
| * | ? | NC_000913 | = 3519887 | 70 (0.660) | 4 (0.040) | 3/264 | NT | 5.4% | coding (817/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter |
| ? | NC_000913 | = 3519903 | 74 (0.730) | coding (801/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter | |||||
| * | ? | NC_000913 | 3594944 = | 94 (0.880) | 7 (0.070) | 4/272 | NT | 7.3% | coding (537/1278 nt) | livM | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | 3594982 = | 87 (0.830) | coding (499/1278 nt) | livM | branched‑chain amino acid ABC transporter permease | |||||
| * | ? | NC_000913 | = 3620350 | NA (NA) | 4 (0.040) | 3/266 | NT | 100% | coding (1159/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620425 | 0 (0.000) | coding (1234/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3625632 | NA (NA) | 4 (0.040) | 4/266 | NT | NA | noncoding (44/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3625670 | NA (NA) | noncoding (82/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3736715 = | 125 (1.170) | 7 (0.070) | 7/266 | NT | 5.8% | coding (463/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | 3736730 = | 109 (1.070) | coding (448/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | 3839241 = | 110 (1.030) | 6 (0.060) | 3/266 | NT | 5.4% | coding (753/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 |
| ? | NC_000913 | 3839282 = | 104 (1.020) | coding (712/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 3998044 | 98 (0.920) | 7 (0.070) | 4/264 | NT | 6.7% | coding (62/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | = 3998069 | 101 (1.000) | coding (87/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||
| * | ? | NC_000913 | = 4081273 | 110 (1.030) | 7 (0.070) | 6/260 | NT | 6.3% | coding (588/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit |
| ? | NC_000913 | = 4081294 | 107 (1.070) | coding (567/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit | |||||
| * | ? | NC_000913 | = 4168341 | 53 (0.500) | 3 (0.030) | 3/258 | NT | 5.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 55 (0.560) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4369155 | 73 (0.680) | 4 (0.040) | 4/258 | NT | 5.1% | intergenic (+15/+1) | fxsA/yjeH | suppressor of F exclusion of phage T7/putative transporter |
| ? | NC_000913 | = 4369174 | 81 (0.820) | coding (1239/1257 nt) | yjeH | putative transporter | |||||