mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 28 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4451146 | 232 (0.990) | 6 (0.030) | 4/260 | NT | 2.4% | coding (89/1503 nt) | ytfR | putative sugar ABC transporter ATPase |
| ? | NC_000913 | = 4451198 | 264 (1.210) | coding (141/1503 nt) | ytfR | putative sugar ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 4162839 | 237 (1.010) | 9 (0.040) | 4/264 | NT | 3.9% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162849 | 214 (0.960) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913 | 4144678 = | 258 (1.100) | 5 (0.020) | 3/260 | NT | 2.3% | coding (684/2298 nt) | pflD | putative glycine radical domain‑containing pyruvate formate‑lyase |
| ? | NC_000913 | 4144774 = | 191 (0.870) | coding (780/2298 nt) | pflD | putative glycine radical domain‑containing pyruvate formate‑lyase | |||||
| * | ? | NC_000913 | = 4051966 | 290 (1.240) | 7 (0.030) | 5/270 | NT | 2.3% | intergenic (+110/‑79) | yihI/hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
| ? | NC_000913 | = 4052012 | 319 (1.400) | intergenic (+156/‑33) | yihI/hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent | |||||
| * | ? | NC_000913 | 4003233 = | 181 (0.770) | 5 (0.020) | 5/262 | NT | 2.7% | intergenic (‑40/+55) | yigG/rarD | PRK11371 family inner membrane protein/putative chloramphenical resistance permease |
| ? | NC_000913 | 4003267 = | 184 (0.830) | intergenic (‑74/+21) | yigG/rarD | PRK11371 family inner membrane protein/putative chloramphenical resistance permease | |||||
| * | ? | NC_000913 | = 3814427 | 272 (1.160) | 4 (0.020) | 3/262 | NT | 1.5% | intergenic (+40/‑67) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor |
| ? | NC_000913 | = 3814432 | 275 (1.250) | intergenic (+45/‑62) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor | |||||
| * | ? | NC_000913 | 3805341 = | 267 (1.140) | 5 (0.020) | 3/274 | NT | 1.8% | coding (610/798 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide |
| ? | NC_000913 | 3805362 = | 278 (1.200) | coding (589/798 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide | |||||
| * | ? | NC_000913 | 3660233 = | 258 (1.100) | 6 (0.030) | 3/270 | NT | 2.3% | coding (1002/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated |
| ? | NC_000913 | 3660285 = | 253 (1.110) | coding (1054/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| * | ? | NC_000913 | 3591775 = | 251 (1.070) | 5 (0.020) | 3/266 | NT | 2.2% | coding (551/1317 nt) | ugpB | sn‑glycerol‑3‑phosphate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 3591803 = | 210 (0.940) | coding (523/1317 nt) | ugpB | sn‑glycerol‑3‑phosphate ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3295753 = | 242 (1.030) | 3 (0.010) | 3/264 | NT | 1.4% | coding (360/396 nt) | yraN | UPF0102 family protein |
| ? | NC_000913 | 3295787 = | 208 (0.940) | coding (394/396 nt) | yraN | UPF0102 family protein | |||||