New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2879381	42 (0.990)	3 (0.070)	3/254	NT	6.7%	coding (392/918 nt)	cas1	multifunctional nuclease Cas1
	?	NC_000913	= 2879386	43 (1.060)					coding (387/918 nt)	cas1	multifunctional nuclease Cas1

ATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2879275‑2879381 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccTGCCCGGCGCTCCGTAGAGCAACTCAGAGGTATAGAAGGCAGTCGCGTGCGGGCAACCTACGCACTTCTGGCGAAGCAATACGGCGTGACATGGAATGGACGTCGCTACGATCCGAAAGACTGGGAAAAGGGCGATACGATC  <  NC_000913/2879386‑2879245                                                                                                                                                                                                                                                           cgcggcGCGGCGTGCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGGAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCTGCCCGGCGCTCCGTAGAGCAACTCAGAGGTATAGA                                                                                                            <  1:680130/137‑1                                      TTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCTGCCCGGCGCTCCGTAGAG                                                                                                                             >  1:421351/1‑89                                      TTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCTGCCCGGCGCTCCGTAGAG                                                                                                                             <  2:421351/89‑1                                                                                                       GCGCCTGCCCGGCGCTCCGTAGAGCAACTCAGAGGTATAGAAGGCAGTCGCGTGCGGGCAACCTACGCACTTCTGGCGAAGCAATACGGCGTGACATGGAATGGCCGTCGCTCCGATCCGAACGACTGGGGCACGGGCGATAC      >  1:151858/1‑143                                                                                                           CTGCCCGGCGCTCCGTAGAGCAACTCAGAGGTATAGAAGGCAGTCGCGTGCGGGCAACCTACGCACTTCTGGCGAAGCAATACGGCGTGACATGGAATGGACGTCGCTACGATCCGAAAGACTGGGAAAAGGGCGATACGATC  >  1:322131/1‑143                                                                                                                                                                                                                                                           ATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2879275‑2879381 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccTGCCCGGCGCTCCGTAGAGCAACTCAGAGGTATAGAAGGCAGTCGCGTGCGGGCAACCTACGCACTTCTGGCGAAGCAATACGGCGTGACATGGAATGGACGTCGCTACGATCCGAAAGACTGGGAAAAGGGCGATACGATC  <  NC_000913/2879386‑2879245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.