New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2879381	42 (0.990)	3 (0.070)	3/254	NT	6.7%	coding (392/918 nt)	cas1	multifunctional nuclease Cas1
	?	NC_000913	= 2879386	43 (1.060)					coding (387/918 nt)	cas1	multifunctional nuclease Cas1

GATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAACACGAACGC  >  NC_000913/2879245‑2879528                                                                                                                                              |                                                                                                                                               gATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAg                                                                                                                                               >  1:322131‑M2/1‑142 (MQ=255)     gTATCGCCCGTGCCCCAGTCGTTCGGATCGGAGCGACGGCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAggcgc                                                                                                                                           >  1:151858‑M2/1‑138 (MQ=255)      tATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGACTTCTATACCTCTGAGTTGCACTACGAAGCACCGGGCAGGCGCa                                                                                                                                          >  2:269553/1‑143 (MQ=255)       ctctaccTTTTGCCAGTCTTTCGGCTCGTAGCGACGTTCGTTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCTCGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAg                                                                                                                                         <  2:142179/138‑1 (MQ=255)                   ccAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCAAGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAAcc                                                                                                                             >  1:126374/1‑143 (MQ=255)                    cAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCg                                                                                                                            >  2:51089/1‑143 (MQ=255)                          ttCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGGGTTGCTCTACGGGGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGtgc                                                                                                                      >  1:717971/1‑141 (MQ=255)                            cGGATCGTAGCGACGTCGATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGAATGCCTCCTATACCTCTGAGTTGCTCTCCGCAGAGCCGGGCACGCGCAGGTTCTCCACGACGAACTTCac                                                                                                                    >  2:43899/1‑142 (MQ=255)                             ggATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATTCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGAGCAAGATCTCCAAACCGaaaaacaaa                                                                                                                   >  1:653502/1‑136 (MQ=255)                             ggATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTGCGCCAGAAGGGCTTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCaaa                                                                                                                   <  1:735061/143‑1 (MQ=255)                               aTCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACa                                                                                                                 >  1:704651/1‑143 (MQ=255)                                    ggccgggTCCATTCCGTGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCATGTTCTCCAAACCGAAGTTCAAACATTTta                                                                                                            <  2:337926/137‑1 (MQ=255)                                        aCGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgta                                                                                                        <  2:244158/143‑1 (MQ=255)                                          gTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgtacg                                                                                                      >  1:196962/1‑143 (MQ=255)                                               ttccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATCCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCACACATTTTACGGACGACCtt                                                                                                 >  1:365992/1‑143 (MQ=255)                                                tccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTc                                                                                                <  1:27602/143‑1 (MQ=255)                                                        aCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCACGCGCAGGTTCTCCAAACCGAGGTTCAAACATTTTACGTACGACCTCCAGACGCaa                                                                                        >  1:737475/1‑143 (MQ=255)                                                          gCCGTATTGCTTCGCCAGAAGTGGGTAGGTTGCCAGCACGCGACTGCCTCAGATACGTCTGAGGTGCTCTACGGAGCGCAGGGCAGGCGCAGGTTCTACAAACCGAAGAAGAAAGAAATTACGAAGGAACCTGAGACGCaaag                                                                                      >  2:436234/1‑142 (MQ=255)                                                            cGTATGGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCt                                                                                    <  1:248553/143‑1 (MQ=255)                                                              tATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTc                                                                                  <  1:765027/143‑1 (MQ=255)                                                                  gCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATcc                                                                              >  2:115124/1‑143 (MQ=255)                                                                    ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCACACATTTTACGTACGACCTTCAGACGCAACTCTTCATCCag                                                                            >  1:507551/1‑143 (MQ=255)                                                                    ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCag                                                                            <  1:115124/143‑1 (MQ=255)                                                                     tCGCCGGAAGGGCGTAGGTTGCCCGGACGCGGCTGCCTTGTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCaga                                                                           <  2:310416/143‑1 (MQ=255)                                                                         cAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCCACCAAAGCaa                                                                       >  2:629395/1‑143 (MQ=255)                                                                           ggagggCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGGTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGt                                                                     <  2:313864/138‑1 (MQ=255)                                                                                  ggaGGTTGCCCGCACGCGACTGCCTTCTATGCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCt                                                              <  2:821677/141‑1 (MQ=255)                                                                                  gTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCt                                                              <  2:817748/143‑1 (MQ=255)                                                                                  gTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCt                                                              >  1:698929/1‑143 (MQ=255)                                                                                   tAGGTTGCCCGCACGCGATTGCGTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATGTGACGTACGACCTTCAGACGCAAATCGTCATCCAGGGCAAGTTTTGCCTg                                                             <  2:534665/143‑1 (MQ=255)                                                                                    cggTCGCCTGCACGCGACCGGCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGa                                                            <  2:243826/142‑1 (MQ=255)                                                                                          cccGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGCCGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGagc                                                      >  1:86691/1‑143 (MQ=255)                                                                                                      tGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGACGTTCAAACATTTTACGTACGACCTTCAGACGCGAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGaa                                          >  1:762073/1‑143 (MQ=255)                                                                                                      tGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGCTCAAACACTGTACGTACGACCTCCAGACGCAAATCTTCACCCAGAGCAAGTATGGCCCGAGAGAGCAGCCTATCTCaa                                          >  2:64112/1‑143 (MQ=255)                                                                                                          ttCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAAcgcg                                      <  1:51089/143‑1 (MQ=255)                                                                                                           tCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctccgcacttctggcgaagcaatacggcgtgacatggaatgcacgccgcgccgcg                                     <  1:680130‑M2/143‑108 (MQ=255)                                                                                                            cTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTCTCTGAACGCGCa                                    >  2:374156/1‑143 (MQ=255)                                                                                                                  ctctGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCa                              >  2:667381/1‑143 (MQ=255)                                                                                                                   tctGGGTTGCTCTACGGAGCGCCGGCCAGGCGCAGGTTCTCCAACCCGAAGTTCAAACATTTTACGTACGACCGTCCGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAg                             <  2:80316/143‑1 (MQ=255)                                                                                                                   tctGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAACTCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAg                             >  1:437243/1‑143 (MQ=255)                                                                                                                         ttGCTCTACGGAGCGCCGGGCAGGCGCAGATACTCCAAACCGAAGTTCAACAACTACACTCACTAGTGTGAGACACAAACCTCCATCCAGAGCAAGTTTTGCCCCACAGAGCAGCTTATCTGAACGCGCACCTCCACGCTGAc                       >  2:803491/1‑143 (MQ=255)                                                                                                                            ctctACGGAGCGCCGGGCAggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctacgcacttctggcgaa                                                                          <  2:421351‑M2/89‑71 (MQ=255)                                                                                                                            ctctACGGAGCGCCGGGCAggcgctccgtagagcaactcagaggtatagaaggcagtcgcgtgcgggcaacctacgcacttctggcgaa                                                                          >  1:421351‑M2/1‑19 (MQ=255)                                                                                                                             tctACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGAACCGCCAGGCTGACCAGa                   >  1:353839/1‑143 (MQ=255)                                                                                                                              ctACGGCGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATGTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGaa                  <  1:780114/143‑1 (MQ=255)                                                                                                                               tACGGCGCGCCGGGCAGGCGCAGGTTCTCCAAGCCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAg                 <  2:225111/143‑1 (MQ=255)                                                                                                                               tACGGAGCGCCGGGCAGGCGCAGGTTCTCCACACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAg                 <  1:28254/143‑1 (MQ=255)                                                                                                                                     gcgcCGGGCAGGCGCAGGTTCTCCAAACCGAAGGTCAAACATTTTACGTAAAACTTCTAGTCGGTATTCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATaaa           <  1:819380/143‑1 (MQ=255)                                                                                                                                        ccGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAacac        <  1:696708/143‑1 (MQ=255)                                                                                                                                         cGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGTAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGAAGCTTATCCGACCGCGCACCTCCAGGCTGACCAGACGCATAAacaag       >  2:127731/1‑141 (MQ=255)                                                                                                                                              aGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAACACGAACGc  <  1:488464/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               GATCGTATCGCCCTTTTCCCAGTCTTTCGGATCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTTTTGCCTGATAGAGCAGCTTATCTGAACGCGCACCTCCAGGCTGACCAGAAGCATAAACACGAACGC  >  NC_000913/2879245‑2879528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.